Co-expression analysis

Gene ID	PtpAffx.225905.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g03060: DNA binding / transcription factor (HF=3e-2)
Module size	12 genes
NF	0.20
%ile	37.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	93.8	0.83	PtpAffx.225905.1.S1_at	pmrna45553	hypothetical protein	-	3e-2	At2g03060	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.84	PtpAffx.119159.1.A1_at	DN490496	-	-	4e+0	At2g30730	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.83	PtpAffx.210708.1.S1_at	pmrna21002	hypothetical protein	-	1e-1	At2g04570	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.88	Ptp.2804.1.S1_at	DN487761	hypothetical protein	-	2e-33	At1g69070	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.88	PtpAffx.32509.1.S1_at	CK112880	-	-	4e+0	At5g65810	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.88	PtpAffx.213916.1.S1_at	pmrna27132	hypothetical protein	-	9e-1	At3g54826	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.85	PtpAffx.215966.1.S1_at	pmrna30455	hypothetical protein	-	3e+0	At5g39650	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.88	PtpAffx.201423.1.S1_at	pmrna2810	hypothetical protein	-	3e-10	At3g53750	ACT3 (actin 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.86	PtpAffx.20264.1.S1_at	CK103709	-	-	2e+0	At1g51160	synbindin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.85	PtpAffx.216803.1.S1_at	pmrna31830	hypothetical protein	-	4e-4	At5g01860	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.87	PtpAffx.214257.1.S1_at	pmrna27740	hypothetical protein	-	8e-2	At2g02230	AtPP2-B1 (Phloem protein 2-B1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.85	PtpAffx.17967.1.A1_at	CV266301	-	-	6e+0	At5g61420	MYB28 (myb domain protein 28)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	91.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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