CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.22589.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g01230: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.54

%ile 84.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 97.0 0.92 PtpAffx.22589.1.A1_at CV276606 hypothetical protein - 2e+0 At3g01230 unknown protein O.I. H.G. S.X.
0.67 91.1 0.93 Ptp.122.1.S1_at CK100070 - - 2e-39 At4g22200 AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3) O.I. H.G. S.X.
0.50 78.6 0.93 PtpAffx.79920.1.A1_at CK090376 hypothetical protein - 1e+0 At5g59845 gibberellin-regulated family protein O.I. H.G. S.X.
0.40 67.0 0.95 Ptp.943.1.A1_at CK089617 hypothetical protein - 1e+0 At1g26590 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.36 61.6 0.94 Ptp.7234.1.S1_at DN492699 - - 2e+0 At5g27750 F-box family protein O.I. H.G. S.X.
0.35 59.7 0.93 Ptp.3133.1.S1_s_at DN490108 hypothetical protein - 1e-24 At4g34980 SLP2 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.92	Ptp.484.1.S1_at	CX169919	hypothetical protein	-	6e-7	At5g50740	metal ion binding	O.I.	H.G.	S.X.
0.36	61.6	0.93	Ptp.4550.1.S1_at	CV234525	hypothetical protein	-	1e-2	At2g46830	CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)	O.I.	H.G.	S.X.
0.36	61.6	0.94	PtpAffx.49767.2.A1_a_at	CK095613	hypothetical protein	-	2e+0	At5g19230	unknown protein	O.I.	H.G.	S.X.
0.36	61.6	0.89	PtpAffx.56409.2.S1_s_at	CV238968	hypothetical protein	-	4e-4	At1g11410	S-locus protein kinase, putative	O.I.	H.G.	S.X.
0.33	57.5	0.92	PtpAffx.213886.1.S1_at	pmrna27081	hypothetical protein	-	9e-2	At1g71710	inositol polyphosphate 5-phosphatase, putative	O.I.	H.G.	S.X.
0.29	50.5	0.84	PtpAffx.221977.1.S1_s_at	pmrna39130	hypothetical protein	-	1e-1	At2g45710	40S ribosomal protein S27 (RPS27A)	O.I.	H.G.	S.X.
0.27	47.1	0.87	PtpAffx.209980.1.S1_at	pmrna19692	hypothetical protein	-	4e-2	At3g28920	AtHB34 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 34)	O.I.	H.G.	S.X.
0.27	47.1	0.91	PtpAffx.147493.1.A1_a_at	CV242671	hypothetical protein	-	3e-8	At1g02070	unknown protein	O.I.	H.G.	S.X.
0.26	45.2	0.91	PtpAffx.213779.1.S1_at	pmrna26902	SAUR family protein	-	9e-1	At4g17150	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.92	PtpAffx.201905.1.S1_s_at	pmrna3798	sulfate/bicarbonate/oxalate exchanger and transporter sat-1	-	3e-13	At5g10180	AST68	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.5 97.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.0 95.3 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7 85.5 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6 84.5 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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