Co-expression analysis

Gene ID PtpAffx.22589.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g01230: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.54
%ile 84.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.92PtpAffx.22589.1.A1_atCV276606hypothetical protein-2e+0At3g01230unknown proteinO.I.H.G.S.X.
0.6791.10.93Ptp.122.1.S1_atCK100070--2e-39At4g22200AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3)O.I.H.G.S.X.
0.5078.60.93PtpAffx.79920.1.A1_atCK090376hypothetical protein-1e+0At5g59845gibberellin-regulated family proteinO.I.H.G.S.X.
0.4067.00.95Ptp.943.1.A1_atCK089617hypothetical protein-1e+0At1g26590zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.3661.60.94Ptp.7234.1.S1_atDN492699--2e+0At5g27750F-box family proteinO.I.H.G.S.X.
0.3559.70.93Ptp.3133.1.S1_s_atDN490108hypothetical protein-1e-24At4g34980SLP2O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.597.8GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.295.6GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
4.095.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327281Populus balsamifera_20071015_Seedling_continuous_light_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.684.5GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1616176_s_at, orthologous to the query gene, PtpAffx.22589.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7390.81616176_s_atAt3g01230hypothetical protein LOC100241581-2e-59At3g04500RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.4057.71616332_atAt3g01230hypothetical protein LOC100259445-2e-1At4g27660unknown proteinO.I.H.G.S.X.
0.3650.71621212_atAt3g01230hypothetical protein LOC100260205-7e-5At4g12790ATP-binding family proteinO.I.H.G.S.X.
0.2734.01610167_atAt3g01230hypothetical protein LOC100254398-4e-12At5g14220HEMG2O.I.H.G.S.X.
0.1920.91614969_atAt3g01230hypothetical protein LOC100252305-3e+0At4g00390transcription regulatorO.I.H.G.S.X.
0.1313.31607448_a_atAt3g01230hypothetical protein LOC100249185-1e+0At1g02130ARA-5 (ARABIDOPSIS RAS 5)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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