Co-expression analysis

Gene ID	PtpAffx.22589.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g01230: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.54
%ile	84.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	0.92	PtpAffx.22589.1.A1_at	CV276606	hypothetical protein	-	2e+0	At3g01230	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.93	Ptp.122.1.S1_at	CK100070	-	-	2e-39	At4g22200	AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.93	PtpAffx.79920.1.A1_at	CK090376	hypothetical protein	-	1e+0	At5g59845	gibberellin-regulated family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.95	Ptp.943.1.A1_at	CK089617	hypothetical protein	-	1e+0	At1g26590	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.94	Ptp.7234.1.S1_at	DN492699	-	-	2e+0	At5g27750	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.93	Ptp.3133.1.S1_s_at	DN490108	hypothetical protein	-	1e-24	At4g34980	SLP2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	97.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.0	95.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the wheat gene, Ta.24279.1.A1_x_at, orthologous to the query gene, PtpAffx.22589.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	Ta.24279.1.A1_x_at	At3g01230	-	-	3e-3	At3g13920	EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1)	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.24128.2.S1_x_at	At3g01230	-	-	1e-12	At2g21580	40S ribosomal protein S25 (RPS25B)	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.2739.3.S1_x_at	At3g01230	Ribosomal protein L19	-	5e-44	At3g16780	60S ribosomal protein L19 (RPL19B)	O.I.	H.G.	S.X.	Please select
0.19	22.4	Ta.18.1.S1_at	At3g01230	-	-	2e-113	At1g54270	EIF4A-2	O.I.	H.G.	S.X.	Please select
0.14	15.8	Ta.24128.1.S1_x_at	At3g01230	-	-	4e-26	At4g39200	40S ribosomal protein S25 (RPS25E)	O.I.	H.G.	S.X.	Please select
0.12	13.3	Ta.23202.1.S1_at	At3g01230	Ribosomal protein P1	-	4e-1	At5g24510	60s acidic ribosomal protein P1, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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