Co-expression analysis

Gene ID PtpAffx.22589.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g01230: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.54
%ile 84.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.92PtpAffx.22589.1.A1_atCV276606hypothetical protein-2e+0At3g01230unknown proteinO.I.H.G.S.X.
0.6791.10.93Ptp.122.1.S1_atCK100070--2e-39At4g22200AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3)O.I.H.G.S.X.
0.5078.60.93PtpAffx.79920.1.A1_atCK090376hypothetical protein-1e+0At5g59845gibberellin-regulated family proteinO.I.H.G.S.X.
0.4067.00.95Ptp.943.1.A1_atCK089617hypothetical protein-1e+0At1g26590zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.3661.60.94Ptp.7234.1.S1_atDN492699--2e+0At5g27750F-box family proteinO.I.H.G.S.X.
0.3559.70.93Ptp.3133.1.S1_s_atDN490108hypothetical protein-1e-24At4g34980SLP2O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.597.8GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.295.6GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
4.095.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327281Populus balsamifera_20071015_Seedling_continuous_light_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.684.5GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os01g0728000, orthologous to the query gene, PtpAffx.22589.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6987.9Os01g0728000At3g01230-Hypothetical protein2e-1At3g33187-O.I.H.G.S.X.
0.7993.6Os07g0692800At3g01230-Protein synthesis initiation factor eIF2 alpha3e-21At2g40290eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putativeO.I.H.G.S.X.
0.7491.4Os11g0187600At3g01230-Heat shock protein 709e-7At5g02500HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)O.I.H.G.S.X.
0.7391.1Os01g0142500At3g01230-Myb, DNA-binding domain containing protein2e-15At5g58900myb family transcription factorO.I.H.G.S.X.
0.7189.6Os11g0485700At3g01230--2e+0At4g23080unknown proteinO.I.H.G.S.X.
0.6787.2Os03g0703700At3g01230--2e-3At5g63740zinc finger protein-relatedO.I.H.G.S.X.
0.6787.2Os04g0152000At3g01230--2e-4At5g45530unknown proteinO.I.H.G.S.X.
0.6181.2Os04g0192100At3g01230--1e-2At1g49950DNA-binding protein, putativeO.I.H.G.S.X.
0.6079.7Os05g0505900At3g01230-Hypothetical protein9e-1At3g10040transcription factorO.I.H.G.S.X.
0.5877.0Os12g0211400At3g01230-HhH-GPD family protein7e-1At4g17310unknown proteinO.I.H.G.S.X.
0.5676.3Os10g0107200At3g01230--2e+0At1g52480O.I.H.G.S.X.
0.5471.9Os04g0656900At3g01230--1e+0At5g25990unknown proteinO.I.H.G.S.X.
0.5371.3Os05g0591450At3g01230--3e+0At1g22790unknown proteinO.I.H.G.S.X.
0.5168.7Os03g0612800At3g01230--1e+0At3g29305unknown proteinO.I.H.G.S.X.
0.5068.0Os12g0421300At3g01230--6e-1At1g12830unknown proteinO.I.H.G.S.X.
0.4762.3Os08g0207400At3g01230--3e-1At2g35270DNA-binding protein-relatedO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays



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