CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.22589.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g01230: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.54

%ile 84.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 97.0 0.92 PtpAffx.22589.1.A1_at CV276606 hypothetical protein - 2e+0 At3g01230 unknown protein O.I. H.G. S.X.
0.67 91.1 0.93 Ptp.122.1.S1_at CK100070 - - 2e-39 At4g22200 AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3) O.I. H.G. S.X.
0.50 78.6 0.93 PtpAffx.79920.1.A1_at CK090376 hypothetical protein - 1e+0 At5g59845 gibberellin-regulated family protein O.I. H.G. S.X.
0.40 67.0 0.95 Ptp.943.1.A1_at CK089617 hypothetical protein - 1e+0 At1g26590 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.36 61.6 0.94 Ptp.7234.1.S1_at DN492699 - - 2e+0 At5g27750 F-box family protein O.I. H.G. S.X.
0.35 59.7 0.93 Ptp.3133.1.S1_s_at DN490108 hypothetical protein - 1e-24 At4g34980 SLP2 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.5 97.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.0 95.3 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7 85.5 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6 84.5 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the barley gene, Contig23066_at, orthologous to the query gene, PtpAffx.22589.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 69.7 Contig23066_at At3g01230 - - 1e+0 At5g54890 RNA binding O.I. H.G. S.X.
0.71 87.1 Contig10037_at At3g01230 - - 9e-1 At5g23760 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.67 84.7 Contig2821_at At3g01230 - - 1e-72 At3g11630 2-cys peroxiredoxin, chloroplast (BAS1) O.I. H.G. S.X.
0.56 74.3 Contig6337_at At3g01230 - - 2e+0 At3g10640 VPS60.1 O.I. H.G. S.X.
0.55 72.0 Contig3806_s_at At3g01230 - - 1e-3 At2g43710 SSI2 O.I. H.G. S.X.
0.44 58.9 Contig11259_at At3g01230 - - 8e-4 At5g17230 phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase O.I. H.G. S.X.
0.38 49.5 Contig3873_at At3g01230 - - 3e-20 At1g01060 LHY (LATE ELONGATED HYPOCOTYL) O.I. H.G. S.X.
0.36 47.1 Contig9509_at At3g01230 - - 7e-1 At3g23980 unknown protein O.I. H.G. S.X.
0.36 47.1 Contig6905_s_at At3g01230 - - 2e+0 At4g19620 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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