Co-expression analysis

Gene ID	PtpAffx.225872.1.S1_at
Gene name	cc-nbs-lrr resistance protein
Homology with Arabidopsis	Similar to At5g12235: CLE22 (CLAVATA3/ESR-RELATED 22) (HF=4e-1)
Module size	7 genes
NF	0.55
%ile	86.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.91	PtpAffx.225872.1.S1_at	pmrna45514	cc-nbs-lrr resistance protein	-	4e-1	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.93	PtpAffx.249.41.S1_a_at	CV239585	hypothetical protein	-	9e-2	At4g15910	ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.93	Ptp.4430.1.S1_a_at	CV242410	hypothetical protein	-	2e-3	At1g09740	ethylene-responsive protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.93	PtpAffx.214806.1.S1_at	pmrna28659	hypothetical protein	-	2e-8	At3g15180	proteasome-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.94	Ptp.4062.1.A1_at	CV245827	hypothetical protein	-	4e-2	At4g24805	methyltransferase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.95	PtpAffx.3707.1.S1_s_at	BP933241	hypothetical protein	-	4e-2	At2g19590	ACO1 (ACC OXIDASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.91	Ptp.1247.1.S1_s_at	CK112058	hypothetical protein	-	3e-47	At5g19550	ASP2 (ASPARTATE AMINOTRANSFERASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.0	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.8	92.1	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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