CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.225864.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g16500: cysteine protease inhibitor family protein / cystatin family protein (HF=1e+0)

Module size 6 genes

NF 0.43

%ile 72.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 86.0 0.91 PtpAffx.225864.1.S1_at pmrna45498 hypothetical protein - 1e+0 At4g16500 cysteine protease inhibitor family protein / cystatin family protein O.I. H.G. S.X.
0.73 93.6 0.91 PtpAffx.215276.1.S1_at pmrna29369 - - 2e+0 At4g20520 RNA binding / RNA-directed DNA polymerase O.I. H.G. S.X.
0.67 91.1 0.92 PtpAffx.214817.1.S1_at pmrna28680 hypothetical protein - 1e-2 At5g53860 emb2737 (embryo defective 2737) O.I. H.G. S.X.
0.44 71.9 0.92 PtpAffx.221803.1.S1_at pmrna38862 hypothetical protein - 1e+1 At5g48480 unknown protein O.I. H.G. S.X.
0.27 47.1 0.91 PtpAffx.217331.1.S1_at pmrna32547 hypothetical protein - 1e+0 At1g05290 transcription factor O.I. H.G. S.X.
0.17 29.1 0.91 PtpAffx.27445.1.S1_at DN495793 - - 8e-1 At3g10300 calcium-binding EF hand family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.60	86.0	0.91	PtpAffx.225864.1.S1_at	pmrna45498	hypothetical protein	-	1e+0	At4g16500	cysteine protease inhibitor family protein / cystatin family protein	O.I.	H.G.	S.X.
0.73	93.6	0.91	PtpAffx.215276.1.S1_at	pmrna29369	-	-	2e+0	At4g20520	RNA binding / RNA-directed DNA polymerase	O.I.	H.G.	S.X.
0.67	91.1	0.92	PtpAffx.214817.1.S1_at	pmrna28680	hypothetical protein	-	1e-2	At5g53860	emb2737 (embryo defective 2737)	O.I.	H.G.	S.X.
0.44	71.9	0.92	PtpAffx.221803.1.S1_at	pmrna38862	hypothetical protein	-	1e+1	At5g48480	unknown protein	O.I.	H.G.	S.X.
0.27	47.1	0.91	PtpAffx.217331.1.S1_at	pmrna32547	hypothetical protein	-	1e+0	At1g05290	transcription factor	O.I.	H.G.	S.X.
0.17	29.1	0.91	PtpAffx.27445.1.S1_at	DN495793	-	-	8e-1	At3g10300	calcium-binding EF hand family protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.53	80.5	0.89	PtpAffx.9819.1.S1_at	DN497878	-	-	9e-1	At5g35737	unknown protein	O.I.	H.G.	S.X.
0.50	78.6	0.83	PtpAffx.217281.1.S1_at	pmrna32474	hypothetical protein	-	1e+0	At1g48145	unknown protein	O.I.	H.G.	S.X.
0.50	78.6	0.86	PtpAffx.209326.1.S1_at	pmrna18440	hypothetical protein	-	2e-8	At5g06080	LBD33 (LOB DOMAIN-CONTAINING PROTEIN 33)	O.I.	H.G.	S.X.
0.50	78.6	0.86	PtpAffx.217858.1.S1_s_at	pmrna33283	chalcone synthase-like protein /// hypothetical protein	-	8e-2	At2g28305	unknown protein	O.I.	H.G.	S.X.
0.50	78.6	0.88	PtpAffx.48367.1.S1_at	BU888923	-	-	5e+0	At4g39930	unknown protein	O.I.	H.G.	S.X.
0.50	78.6	0.90	PtpAffx.27724.1.S1_at	BU873611	-	-	2e-1	At1g03140	splicing factor Prp18 family protein	O.I.	H.G.	S.X.
0.50	78.6	0.90	PtpAffx.218586.1.S1_at	pmrna34253	hypothetical protein	-	1e+1	At4g00650	FRI (FRIGIDA)	O.I.	H.G.	S.X.
0.46	73.7	0.88	PtpAffx.218152.1.S1_at	pmrna33683	-	-	2e+0	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	O.I.	H.G.	S.X.
0.46	73.7	0.89	PtpAffx.200866.1.S1_at	pmrna1691	hypothetical protein	-	1e-2	At1g21323	unknown protein	O.I.	H.G.	S.X.
0.44	71.9	0.87	PtpAffx.219017.1.S1_at	pmrna34806	hypothetical protein	-	3e+0	At2g39100	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.44	71.9	0.88	PtpAffx.200286.1.S1_at	pmrna567	hypothetical protein	-	7e-2	At4g39260	GR-RBP8	O.I.	H.G.	S.X.
0.44	71.9	0.88	Ptp.2186.2.S1_at	CV230348	hypothetical protein	-	2e-8	At2g24200	cytosol aminopeptidase	O.I.	H.G.	S.X.
0.44	71.9	0.88	PtpAffx.43704.1.A1_at	CV260823	-	-	2e+0	At4g02770	PSAD-1 (photosystem I subunit D-1)	O.I.	H.G.	S.X.
0.44	71.9	0.88	PtpAffx.217986.1.S1_x_at	pmrna33481	hypothetical protein	-	1e-1	At5g35810	-	O.I.	H.G.	S.X.
0.44	71.9	0.90	PtpAffx.209298.1.S1_at	pmrna18380	hypothetical protein	-	4e+0	At4g08073	unknown protein	O.I.	H.G.	S.X.
0.43	69.7	0.90	PtpAffx.218370.1.S1_at	pmrna33954	hypothetical protein	-	1e-28	At3g54230	nucleic acid binding / nucleotide binding / zinc ion binding	O.I.	H.G.	S.X.
0.40	67.0	0.86	PtpAffx.220395.1.S1_at	pmrna36776	-	-	7e+0	At2g20940	unknown protein	O.I.	H.G.	S.X.
0.40	67.0	0.87	PtpAffx.18509.1.A1_at	CV244180	-	-	9e-2	At1g01110	IQD18 (IQ-domain 18)	O.I.	H.G.	S.X.
0.40	67.0	0.88	PtpAffx.24402.2.A1_at	CV273805	-	-	3e-1	At3g10360	APUM4 (Arabidopsis Pumilio 4)	O.I.	H.G.	S.X.
0.40	67.0	0.89	PtpAffx.203634.1.S1_at	pmrna7201	hypothetical protein	-	2e-1	At2g39390	60S ribosomal protein L35 (RPL35B)	O.I.	H.G.	S.X.
0.40	67.0	0.89	PtpAffx.212946.1.S1_at	pmrna25335	hypothetical protein	-	1e+0	At1g48745	unknown protein	O.I.	H.G.	S.X.
0.40	67.0	0.90	PtpAffx.217491.1.S1_at	pmrna32776	-	-	4e+0	At1g12180	-	O.I.	H.G.	S.X.
0.40	67.0	0.90	PtpAffx.217157.1.S1_at	pmrna32308	hypothetical protein	-	4e+1	At5g57000	unknown protein	O.I.	H.G.	S.X.
0.38	63.7	0.85	PtpAffx.157582.1.S1_at	CF236034	-	-	2e+0	At5g41390	-	O.I.	H.G.	S.X.
0.38	63.7	0.89	Ptp.657.2.A1_at	CV267167	-	-	2e-21	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.
0.38	63.7	0.85	Ptp.8080.1.S1_at	DN499494	hypothetical protein	-	5e+0	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.
0.38	63.7	0.89	PtpAffx.121406.1.A1_s_at	CV241112	hypothetical protein	-	2e+0	At5g45790	ubiquitin thiolesterase	O.I.	H.G.	S.X.
0.36	61.6	0.85	PtpAffx.222986.1.S1_at	pmrna40742	hypothetical protein	-	8e-5	At1g75120	RRA1 (REDUCED RESIDUAL ARABINOSE 1)	O.I.	H.G.	S.X.
0.36	61.6	0.86	PtpAffx.215165.1.S1_at	pmrna29205	hypothetical protein	-	5e+0	At5g11120	unknown protein	O.I.	H.G.	S.X.
0.36	61.6	0.88	PtpAffx.218742.1.S1_at	pmrna34465	hypothetical protein	-	2e+1	At5g41430	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.36	61.6	0.88	Ptp.6925.1.S1_at	BU829503	-	-	9e+0	At5g15948	CPuORF10 (Conserved peptide upstream open reading frame 10)	O.I.	H.G.	S.X.
0.36	61.6	0.88	PtpAffx.218182.1.S1_at	pmrna33729	hypothetical protein	-	3e+0	At1g24996	unknown protein	O.I.	H.G.	S.X.
0.35	59.7	0.89	PtpAffx.212499.1.S1_at	pmrna24475	-	-	1e-1	At5g01710	-	O.I.	H.G.	S.X.
0.35	59.7	0.89	PtpAffx.207643.1.S1_at	pmrna15162	hypothetical protein	-	3e-1	At3g57390	AGL18	O.I.	H.G.	S.X.
0.35	59.7	0.88	PtpAffx.29214.1.A1_at	DN484339	-	-	7e-1	At3g49190	condensation domain-containing protein	O.I.	H.G.	S.X.
0.33	57.5	0.85	PtpAffx.222971.1.S1_at	pmrna40717	hypothetical protein	-	4e+0	At5g37660	PDLP7 (PLASMODESMATA-LOCATED PROTEIN 7)	O.I.	H.G.	S.X.
0.33	57.5	0.86	Ptp.3807.1.S1_at	DN487785	-	-	2e+0	At5g54880	DTW domain-containing protein	O.I.	H.G.	S.X.
0.33	57.5	0.87	PtpAffx.214647.1.S1_s_at	pmrna28448	-	-	7e+0	At5g09660	PMDH2 (peroxisomal NAD-malate dehydrogenase 2)	O.I.	H.G.	S.X.
0.33	57.5	0.87	PtpAffx.220396.1.S1_at	pmrna36777	hypothetical protein	-	1e+1	At3g20993	LCR56 (Low-molecular-weight cysteine-rich 56)	O.I.	H.G.	S.X.
0.33	57.5	0.88	PtpAffx.3359.1.S1_at	CK095178	-	-	3e+0	At5g44582	unknown protein	O.I.	H.G.	S.X.
0.33	57.5	0.88	PtpAffx.82415.1.A1_at	CV247167	-	-	3e+0	At4g16830	nuclear RNA-binding protein (RGGA)	O.I.	H.G.	S.X.
0.33	57.5	0.88	PtpAffx.163316.1.S1_at	BU871132	hypothetical protein	-	4e-8	At5g06340	ATNUDX27 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 27)	O.I.	H.G.	S.X.
0.33	57.5	0.89	PtpAffx.202991.1.S1_at	pmrna5919	hypothetical protein	-	6e-1	At3g04510	LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)	O.I.	H.G.	S.X.
0.33	57.5	0.89	PtpAffx.202188.1.S1_at	pmrna4373	-	-	4e-11	At1g01880	DNA repair protein, putative	O.I.	H.G.	S.X.
0.33	57.5	0.90	PtpAffx.219472.1.S1_at	pmrna35401	-	-	2e-1	At5g06250	transcription factor	O.I.	H.G.	S.X.
0.33	57.5	0.90	PtpAffx.215389.1.S1_at	pmrna29548	hypothetical protein	-	8e+0	At3g06100	NIP7	O.I.	H.G.	S.X.
0.32	55.2	0.84	PtpAffx.204276.1.S1_at	pmrna8408	SAUR family protein	-	5e-4	At4g34810	auxin-responsive family protein	O.I.	H.G.	S.X.
0.32	55.2	0.88	PtpAffx.216166.1.S1_at	pmrna30780	hypothetical protein	-	6e+0	At2g23800	GGPS2 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2)	O.I.	H.G.	S.X.
0.32	55.2	0.89	PtpAffx.203936.1.S1_at	pmrna7766	hypothetical protein	-	7e-1	At3g06740	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.
0.32	55.2	0.89	PtpAffx.215743.1.S1_at	pmrna30117	hypothetical protein	-	3e-1	At2g44910	ATHB4 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.3 98.2 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.9 96.5 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0 88.0 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9 87.2 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
7.3	98.2	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.9	96.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	PtpAffx.225864.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g16500: cysteine protease inhibitor family protein / cystatin family protein (HF=1e+0)
Module size	6 genes
NF	0.43
%ile	72.1

Co-expression analysis

Gene ID PtpAffx.225864.1.S1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At4g16500: cysteine protease inhibitor family protein / cystatin family protein (HF=1e+0) Module size 6 genes NF 0.43 %ile 72.1

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.225864.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g16500: cysteine protease inhibitor family protein / cystatin family protein (HF=1e+0)

Module size 6 genes

NF 0.43

%ile 72.1

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays