Co-expression analysis

Gene ID	PtpAffx.225864.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g16500: cysteine protease inhibitor family protein / cystatin family protein (HF=1e+0)
Module size	6 genes
NF	0.43
%ile	72.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.91	PtpAffx.225864.1.S1_at	pmrna45498	hypothetical protein	-	1e+0	At4g16500	cysteine protease inhibitor family protein / cystatin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.91	PtpAffx.215276.1.S1_at	pmrna29369	-	-	2e+0	At4g20520	RNA binding / RNA-directed DNA polymerase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.92	PtpAffx.214817.1.S1_at	pmrna28680	hypothetical protein	-	1e-2	At5g53860	emb2737 (embryo defective 2737)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.92	PtpAffx.221803.1.S1_at	pmrna38862	hypothetical protein	-	1e+1	At5g48480	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.91	PtpAffx.217331.1.S1_at	pmrna32547	hypothetical protein	-	1e+0	At1g05290	transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.91	PtpAffx.27445.1.S1_at	DN495793	-	-	8e-1	At3g10300	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.3	98.2	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.9	96.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the maize gene, Zm.9863.1.A1_a_at, orthologous to the query gene, PtpAffx.225864.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	Zm.9863.1.A1_a_at	At4g16500	hypothetical protein LOC100277372	-	2e+0	At5g48250	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	ZmAffx.933.1.S1_at	At4g16500	-	-	3e+0	At5g18100	CSD3 (copper/zinc superoxide dismutase 3)	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.10832.1.A1_at	At4g16500	-	-	5e+0	At4g08190	Ras-related GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.9709.1.A1_at	At4g16500	-	-	4e-1	At4g27652	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	Zm.17271.9.A1_at	At4g16500	hypothetical protein LOC100273505	-	9e-9	At4g25740	40S ribosomal protein S10 (RPS10A)	O.I.	H.G.	S.X.	Please select
0.19	12.8	Zm.8822.2.A1_at	At4g16500	xylanase inhibitor protein 1	-	6e+0	At5g56480	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	Zm.10518.1.S1_at	At4g16500	-	-	2e+0	At1g02710	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.16	9.4	ZmAffx.918.1.A1_at	At4g16500	-	-	8e-1	At3g06750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.16	9.4	Zm.12157.1.S1_a_at	At4g16500	PIF-like orf1	-	6e-1	At5g20180	ribosomal protein L36 family protein	O.I.	H.G.	S.X.	Please select
0.16	9.4	ZmAffx.844.1.S1_at	At4g16500	-	-	1e-1	At5g59820	RHL41 (RESPONSIVE TO HIGH LIGHT 41)	O.I.	H.G.	S.X.	Please select
0.15	8.6	Zm.2864.1.S1_at	At4g16500	nucleotide-binding protein 1	-	4e-33	At5g50960	NBP35 (NUCLEOTIDE BINDING PROTEIN 35)	O.I.	H.G.	S.X.	Please select
0.13	6.8	Zm.10810.1.S1_at	At4g16500	deoxymugineic acid synthase1	-	1e+1	At5g67190	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.13	6.8	ZmAffx.779.1.S1_at	At4g16500	-	-	5e-33	Atcg00780	-	O.I.	H.G.	S.X.	Please select
0.12	5.9	Zm.361.1.A1_at	At4g16500	response regulator 8	-	5e-3	At3g16857	ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1)	O.I.	H.G.	S.X.	Please select
0.12	5.9	ZmAffx.13.1.S1_s_at	At4g16500	cellulose synthase 11	-	2e-61	At4g18780	IRX1 (IRREGULAR XYLEM 1)	O.I.	H.G.	S.X.	Please select
0.12	5.9	Zm.18090.1.S1_at	At4g16500	golgi SNARE 12 protein	-	1e-8	At1g15880	GOS11 (golgi snare 11)	O.I.	H.G.	S.X.	Please select
0.11	5.3	Zm.18136.1.S1_at	At4g16500	-	-	1e+1	At5g02710	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	4.6	ZmAffx.1187.1.S1_at	At4g16500	-	-	3e+0	At4g29033	-	O.I.	H.G.	S.X.	Please select
0.10	4.6	Zm.8881.1.S1_at	At4g16500	Hypothetical protein LOC100192858	-	2e+0	At3g25545	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	4.0	Zm.13354.1.S1_s_at	At4g16500	indole-3-acetic acid-amido synthetase GH3.8	-	4e-12	At2g14960	GH3.1	O.I.	H.G.	S.X.	Please select
0.07	2.9	Zm.19263.1.S1_at	At4g16500	hypothetical protein LOC100192665	-	7e-1	At4g11020	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	1.5	Zm.2910.1.S1_a_at	At4g16500	hypothetical protein LOC100217030 /// hypothetical protein LOC100277437	-	8e+0	At5g02920	ubiquitin-protein ligase	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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