Co-expression analysis

Gene ID	PtpAffx.225864.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g16500: cysteine protease inhibitor family protein / cystatin family protein (HF=1e+0)
Module size	6 genes
NF	0.43
%ile	72.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.91	PtpAffx.225864.1.S1_at	pmrna45498	hypothetical protein	-	1e+0	At4g16500	cysteine protease inhibitor family protein / cystatin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.91	PtpAffx.215276.1.S1_at	pmrna29369	-	-	2e+0	At4g20520	RNA binding / RNA-directed DNA polymerase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.92	PtpAffx.214817.1.S1_at	pmrna28680	hypothetical protein	-	1e-2	At5g53860	emb2737 (embryo defective 2737)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.92	PtpAffx.221803.1.S1_at	pmrna38862	hypothetical protein	-	1e+1	At5g48480	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.91	PtpAffx.217331.1.S1_at	pmrna32547	hypothetical protein	-	1e+0	At1g05290	transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.91	PtpAffx.27445.1.S1_at	DN495793	-	-	8e-1	At3g10300	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.3	98.2	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.9	96.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.115792.1.S1_at, orthologous to the query gene, PtpAffx.225864.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	94.1	TaAffx.115792.1.S1_at	At4g16500	-	-	2e-1	At3g02870	VTC4	O.I.	H.G.	S.X.	Please select
0.52	73.7	Ta.10164.1.S1_x_at	At4g16500	-	-	3e-1	At3g57440	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	Ta.13292.1.S1_s_at	At4g16500	-	-	2e-2	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	O.I.	H.G.	S.X.	Please select
0.48	69.0	Ta.4811.1.S1_x_at	At4g16500	-	-	1e-2	At1g28590	lipase, putative	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.20658.1.S1_x_at	At4g16500	-	-	4e-1	At3g06130	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.14029.1.S1_at	At4g16500	-	-	3e+0	At3g01230	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.10164.2.S1_a_at	At4g16500	-	-	2e+1	At5g12190	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.20658.1.S1_a_at	At4g16500	-	-	4e-1	At3g06130	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.22087.1.S1_at	At4g16500	-	-	3e+0	At3g17950	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.2870.2.S1_at	At4g16500	-	-	3e-31	At3g17820	ATGSKB6	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.22430.1.S1_at	At4g16500	-	-	2e+0	At5g02960	40S ribosomal protein S23 (RPS23B)	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.29445.1.S1_at	At4g16500	-	-	3e+0	At3g48660	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	TaAffx.3910.2.A1_x_at	At4g16500	-	-	1e-1	At3g57440	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.21020.1.S1_at	At4g16500	-	-	3e+0	At3g57710	protein kinase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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