Co-expression analysis

Gene ID PtpAffx.225864.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g16500: cysteine protease inhibitor family protein / cystatin family protein (HF=1e+0)
Module size 6 genes
NF 0.43
%ile 72.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6086.00.91PtpAffx.225864.1.S1_atpmrna45498hypothetical protein-1e+0At4g16500cysteine protease inhibitor family protein / cystatin family proteinO.I.H.G.S.X.
0.7393.60.91PtpAffx.215276.1.S1_atpmrna29369--2e+0At4g20520RNA binding / RNA-directed DNA polymeraseO.I.H.G.S.X.
0.6791.10.92PtpAffx.214817.1.S1_atpmrna28680hypothetical protein-1e-2At5g53860emb2737 (embryo defective 2737)O.I.H.G.S.X.
0.4471.90.92PtpAffx.221803.1.S1_atpmrna38862hypothetical protein-1e+1At5g48480unknown proteinO.I.H.G.S.X.
0.2747.10.91PtpAffx.217331.1.S1_atpmrna32547hypothetical protein-1e+0At1g05290transcription factorO.I.H.G.S.X.
0.1729.10.91PtpAffx.27445.1.S1_atDN495793--8e-1At3g10300calcium-binding EF hand family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.398.2GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
4.996.5GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

A co-expression module including the barley gene, HVSMEn0010H11f_at, orthologous to the query gene, PtpAffx.225864.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5268.3HVSMEn0010H11f_atAt4g16500--2e+1At4g06536-O.I.H.G.S.X.
0.4661.0Contig22210_atAt4g16500--1e+0At5g45550mob1/phocein family proteinO.I.H.G.S.X.
0.4458.9Contig10860_atAt4g16500--1e+0At5g49860jacalin lectin family proteinO.I.H.G.S.X.
0.3342.6Contig23805_atAt4g16500--2e+0At2g30560glycine-rich proteinO.I.H.G.S.X.
0.3037.0Contig24850_atAt4g16500--5e+0At2g12462unknown proteinO.I.H.G.S.X.
0.2935.5Contig2590_atAt4g16500--4e-32At3g12390nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeO.I.H.G.S.X.
0.2835.5Contig11079_atAt4g16500--9e-9At3g26420ATRZ-1AO.I.H.G.S.X.
0.2732.1EBed01_SQ002_L05_s_atAt4g16500--3e+0At2g43018CPuORF17 (Conserved peptide upstream open reading frame 17)O.I.H.G.S.X.
0.2326.1Contig17759_atAt4g16500--4e-1At3g1151040S ribosomal protein S14 (RPS14B)O.I.H.G.S.X.
0.1716.9Contig14848_atAt4g16500--5e+0At3g55240-O.I.H.G.S.X.
0.1716.9Contig17670_atAt4g16500--3e+0At5g48420unknown proteinO.I.H.G.S.X.
0.1615.3Contig19821_atAt4g16500--9e-1At5g25980TGG2 (GLUCOSIDE GLUCOHYDROLASE 2)O.I.H.G.S.X.
0.1615.3HS18H24u_atAt4g16500--5e+0At5g07580DNA binding / transcription factorO.I.H.G.S.X.
0.1210.4Contig13111_atAt4g16500--1e-5At2g46320mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.054.1Contig12346_atAt4g16500--3e-1At3g24515UBC37 (ubiquitin-conjugating enzyme 37)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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