Co-expression analysis

Gene ID	PtpAffx.225864.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g16500: cysteine protease inhibitor family protein / cystatin family protein (HF=1e+0)
Module size	6 genes
NF	0.43
%ile	72.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.91	PtpAffx.225864.1.S1_at	pmrna45498	hypothetical protein	-	1e+0	At4g16500	cysteine protease inhibitor family protein / cystatin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.91	PtpAffx.215276.1.S1_at	pmrna29369	-	-	2e+0	At4g20520	RNA binding / RNA-directed DNA polymerase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.92	PtpAffx.214817.1.S1_at	pmrna28680	hypothetical protein	-	1e-2	At5g53860	emb2737 (embryo defective 2737)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.92	PtpAffx.221803.1.S1_at	pmrna38862	hypothetical protein	-	1e+1	At5g48480	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.91	PtpAffx.217331.1.S1_at	pmrna32547	hypothetical protein	-	1e+0	At1g05290	transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.91	PtpAffx.27445.1.S1_at	DN495793	-	-	8e-1	At3g10300	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.3	98.2	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.9	96.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.92864.1.A1_s_at, orthologous to the query gene, PtpAffx.225864.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.3	GmaAffx.92864.1.A1_s_at	At4g16500	-	-	6e+0	At5g65840	-	O.I.	H.G.	S.X.	Please select
0.17	21.2	Gma.9330.1.S1_at	At4g16500	-	-	1e+1	At5g67560	ATARLA1D (ADP-ribosylation factor-like A1D)	O.I.	H.G.	S.X.	Please select
0.10	13.0	Gma.420.1.S1_at	At4g16500	-	-	5e-50	At5g27720	emb1644 (embryo defective 1644)	O.I.	H.G.	S.X.	Please select
0.05	8.0	Gma.3818.1.S1_at	At4g16500	-	-	9e-2	At5g15581	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	4.5	Gma.8096.1.S1_at	At4g16500	-	-	9e-1	At3g01410	RNase H domain-containing protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	Gma.6320.1.S1_at	At4g16500	-	-	5e-1	At1g30930	F-box family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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