Co-expression analysis

Gene ID PtpAffx.225753.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g35350: XCP1 (XYLEM CYSTEINE PEPTIDASE 1) (HF=4e-20)
Module size 16 genes
NF 0.13
%ile 25.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6588.60.83PtpAffx.225753.1.S1_atpmrna45324hypothetical protein-4e-20At4g35350XCP1 (XYLEM CYSTEINE PEPTIDASE 1)O.I.H.G.S.X.
0.4268.60.90PtpAffx.63695.1.A1_atCV228816hypothetical protein-1e+1At5g50770AtHSD6 (hydroxysteroid dehydrogenase 6)O.I.H.G.S.X.
0.3255.20.89PtpAffx.205392.1.S1_atpmrna10679hypothetical protein-3e-81At4g07960ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12)O.I.H.G.S.X.
0.2034.60.91PtpAffx.201915.1.S1_atpmrna3812hypothetical protein-3e-19At1g78060glycosyl hydrolase family 3 proteinO.I.H.G.S.X.
0.1729.10.93PtpAffx.207486.1.S1_x_atpmrna14864hypothetical protein-4e-21At1g78880balbiani ring 1-related / BR1-relatedO.I.H.G.S.X.
0.1219.60.88PtpAffx.3076.1.S1_atCV228815hypothetical protein-1e-5At1g54790GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.1219.60.90PtpAffx.17980.3.A1_a_atCK091009hypothetical protein-5e-1At1g08340rac GTPase activating protein, putativeO.I.H.G.S.X.
0.1118.10.90PtpAffx.201729.1.S1_atpmrna3435hypothetical protein-5e-7At5g28150unknown proteinO.I.H.G.S.X.
0.1118.10.91Ptp.4493.1.S1_s_atCK091001hypothetical protein-2e+0At3g60210chloroplast chaperonin 10, putativeO.I.H.G.S.X.
0.1118.10.92PtpAffx.148436.1.S1_atCK090929hypothetical protein-3e-62At1g51540-O.I.H.G.S.X.
0.0914.60.92PtpAffx.204019.1.S1_atpmrna7927hypothetical protein-0At5g37020ARF8 (AUXIN RESPONSE FACTOR 8)O.I.H.G.S.X.
0.0914.60.89PtpAffx.145919.1.S1_s_atBU886405hypothetical protein-8e-30At4g35020ARAC3 (ARABIDOPSIS RAC-LIKE 3)O.I.H.G.S.X.
0.0812.90.91PtpAffx.127541.1.A1_atCV239269hypothetical protein-6e-6At3g26935zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.0711.60.89PtpAffx.207817.1.S1_atpmrna15533hypothetical protein-3e-108At3g12670emb2742 (embryo defective 2742)O.I.H.G.S.X.
0.0711.60.90PtpAffx.36859.1.A1_atCV130787hypothetical protein-5e-4At1g76160sks5 (SKU5 Similar 5)O.I.H.G.S.X.
0.046.90.91PtpAffx.29077.1.A1_s_atBP932827hypothetical protein-1e-28At4g01810protein transport protein-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.794.7GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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