Co-expression analysis

Gene ID	PtpAffx.225753.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g35350: XCP1 (XYLEM CYSTEINE PEPTIDASE 1) (HF=4e-20)
Module size	16 genes
NF	0.13
%ile	25.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	88.6	0.83	PtpAffx.225753.1.S1_at	pmrna45324	hypothetical protein	-	4e-20	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.90	PtpAffx.63695.1.A1_at	CV228816	hypothetical protein	-	1e+1	At5g50770	AtHSD6 (hydroxysteroid dehydrogenase 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.89	PtpAffx.205392.1.S1_at	pmrna10679	hypothetical protein	-	3e-81	At4g07960	ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.91	PtpAffx.201915.1.S1_at	pmrna3812	hypothetical protein	-	3e-19	At1g78060	glycosyl hydrolase family 3 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.93	PtpAffx.207486.1.S1_x_at	pmrna14864	hypothetical protein	-	4e-21	At1g78880	balbiani ring 1-related / BR1-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.88	PtpAffx.3076.1.S1_at	CV228815	hypothetical protein	-	1e-5	At1g54790	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.90	PtpAffx.17980.3.A1_a_at	CK091009	hypothetical protein	-	5e-1	At1g08340	rac GTPase activating protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.90	PtpAffx.201729.1.S1_at	pmrna3435	hypothetical protein	-	5e-7	At5g28150	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.91	Ptp.4493.1.S1_s_at	CK091001	hypothetical protein	-	2e+0	At3g60210	chloroplast chaperonin 10, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.92	PtpAffx.148436.1.S1_at	CK090929	hypothetical protein	-	3e-62	At1g51540	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.92	PtpAffx.204019.1.S1_at	pmrna7927	hypothetical protein	-	0	At5g37020	ARF8 (AUXIN RESPONSE FACTOR 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.89	PtpAffx.145919.1.S1_s_at	BU886405	hypothetical protein	-	8e-30	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.91	PtpAffx.127541.1.A1_at	CV239269	hypothetical protein	-	6e-6	At3g26935	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.89	PtpAffx.207817.1.S1_at	pmrna15533	hypothetical protein	-	3e-108	At3g12670	emb2742 (embryo defective 2742)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.90	PtpAffx.36859.1.A1_at	CV130787	hypothetical protein	-	5e-4	At1g76160	sks5 (SKU5 Similar 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.91	PtpAffx.29077.1.A1_s_at	BP932827	hypothetical protein	-	1e-28	At4g01810	protein transport protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	94.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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