Co-expression analysis

Gene ID PtpAffx.225610.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g01050: laccase family protein / diphenol oxidase family protein (HF=9e-4)
Module size 7 genes
NF 0.49
%ile 80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8096.00.94PtpAffx.225610.1.S1_atpmrna45070hypothetical protein-9e-4At5g01050laccase family protein / diphenol oxidase family proteinO.I.H.G.S.X.
0.6086.00.93PtpAffx.211797.1.S1_s_atpmrna23135hypothetical protein-1e-23At3g21530endonuclease/exonuclease/phosphatase family proteinO.I.H.G.S.X.
0.5078.60.95PtpAffx.795.1.A1_atCV273354hypothetical protein-5e+0At5g59480haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.4471.90.96PtpAffx.204632.1.S1_atpmrna9105hypothetical protein-1e-1At5g50200WR3 (WOUND-RESPONSIVE 3)O.I.H.G.S.X.
0.4471.90.97Ptp.7695.1.S1_s_atBU862504hypothetical protein-2e-2At5g02020unknown proteinO.I.H.G.S.X.
0.3661.60.96PtpAffx.225008.1.S1_atpmrna43994hypothetical protein-2e+0At5g65580unknown proteinO.I.H.G.S.X.
0.2340.50.95PtpAffx.214531.1.S1_atpmrna28244hypothetical protein-1e-7At5g20550oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4471.90.96Ptp.3978.1.S1_atCX656376--3e-12At2g37130peroxidase 21 (PER21) (P21) (PRXR5)O.I.H.G.S.X.
0.4471.90.93Ptp.3788.1.A1_s_atCV276438hypothetical protein-1e+0At1g56240AtPP2-B13 (Phloem protein 2-B13)O.I.H.G.S.X.
0.4369.70.94PtpAffx.5232.1.A1_atCV256388hypothetical protein-3e-1At3g22231PCC1 (PATHOGEN AND CIRCADIAN CONTROLLED 1)O.I.H.G.S.X.
0.4067.00.94Ptp.7181.1.S1_atDN488307hypothetical protein-2e-6At1g49570peroxidase, putativeO.I.H.G.S.X.
0.3863.70.89PtpAffx.132698.2.S1_atCX655024--3e-4At2g24980proline-rich extensin-like family proteinO.I.H.G.S.X.
0.3661.60.93PtpAffx.209247.1.S1_atpmrna18281hypothetical protein-7e-1At2g11651unknown proteinO.I.H.G.S.X.
0.3357.50.96PtpAffx.9749.1.A1_atDN491489hypothetical protein-4e+0At5g04790unknown proteinO.I.H.G.S.X.
0.3255.20.89Ptp.3819.1.S1_atDN488352hypothetical protein-4e-1At3g45230hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.2950.50.96PtpAffx.77546.1.S1_s_atBI127036hypothetical protein-3e-1At5g12310zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2950.50.96PtpAffx.213719.1.S1_atpmrna26773hypothetical protein-2e-48At3g51630WNK5 (WITH NO LYSINE (K) KINASE 5)O.I.H.G.S.X.
0.2950.50.96PtpAffx.152294.1.S1_atCX653673--5e-1At3g59440calcium-binding protein, putativeO.I.H.G.S.X.
0.2747.10.90PtpAffx.219544.1.S1_s_atpmrna35492cc-nbs-lrr resistance protein /// cc-nbs-lrr resistance protein-1e+0At5g65280GCL1 (GCR2-LIKE 1)O.I.H.G.S.X.
0.2747.10.95Ptp.6340.1.S1_atBU888207hypothetical protein-2e-2At5g59000zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2645.20.91Ptp.3788.1.A1_atCV276438hypothetical protein-1e+0At1g56240AtPP2-B13 (Phloem protein 2-B13)O.I.H.G.S.X.
0.2543.60.90PtpAffx.31936.1.A1_atCV273638hypothetical protein-2e-6At2g38310unknown proteinO.I.H.G.S.X.
0.2543.60.93Ptp.6077.1.S1_s_atBI122891hypothetical protein-1e+0At4g21920unknown proteinO.I.H.G.S.X.
0.2543.60.93PtpAffx.213898.1.S1_atpmrna27100hypothetical protein-2e-11At5g39970catalyticO.I.H.G.S.X.
0.2543.60.93Ptp.7056.1.S1_atBU884296hypothetical protein-8e-1At5g39240unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.794.7GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.393.7GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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