Co-expression analysis

Gene ID PtpAffx.225610.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g01050: laccase family protein / diphenol oxidase family protein (HF=9e-4)
Module size 7 genes
NF 0.49
%ile 80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8096.00.94PtpAffx.225610.1.S1_atpmrna45070hypothetical protein-9e-4At5g01050laccase family protein / diphenol oxidase family proteinO.I.H.G.S.X.
0.6086.00.93PtpAffx.211797.1.S1_s_atpmrna23135hypothetical protein-1e-23At3g21530endonuclease/exonuclease/phosphatase family proteinO.I.H.G.S.X.
0.5078.60.95PtpAffx.795.1.A1_atCV273354hypothetical protein-5e+0At5g59480haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.4471.90.96PtpAffx.204632.1.S1_atpmrna9105hypothetical protein-1e-1At5g50200WR3 (WOUND-RESPONSIVE 3)O.I.H.G.S.X.
0.4471.90.97Ptp.7695.1.S1_s_atBU862504hypothetical protein-2e-2At5g02020unknown proteinO.I.H.G.S.X.
0.3661.60.96PtpAffx.225008.1.S1_atpmrna43994hypothetical protein-2e+0At5g65580unknown proteinO.I.H.G.S.X.
0.2340.50.95PtpAffx.214531.1.S1_atpmrna28244hypothetical protein-1e-7At5g20550oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.794.7GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.393.7GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1611641_at, orthologous to the query gene, PtpAffx.225610.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9699.71611641_atAt5g01050hypothetical protein LOC100258642-7e-2At5g07130LAC13 (laccase 13)O.I.H.G.S.X.
0.2937.71622454_atAt5g01050hypothetical protein LOC100246221-2e-1At1g26630FBR12 (FUMONISIN B1-RESISTANT12)O.I.H.G.S.X.
0.2837.71611295_atAt5g01050--9e-23At3g01350proton-dependent oligopeptide transport (POT) family proteinO.I.H.G.S.X.
0.2632.01618671_atAt5g01050--4e+0At5g42930triacylglycerol lipaseO.I.H.G.S.X.
0.2530.51615677_atAt5g01050--4e+0At4g21216unknown proteinO.I.H.G.S.X.
0.2327.51610450_atAt5g01050--1e+0At1g76955Expressed proteinO.I.H.G.S.X.
0.1920.91621333_atAt5g01050hypothetical protein LOC100252816-2e-6At1g22930T-complex protein 11O.I.H.G.S.X.
0.1920.91614092_atAt5g01050hypothetical protein LOC100257864-1e+0At2g39900LIM domain-containing proteinO.I.H.G.S.X.
0.1819.41618331_atAt5g01050hypothetical protein LOC100249945-6e-2At2g32487unknown proteinO.I.H.G.S.X.
0.1718.21610474_atAt5g01050similar to KEA1 (K EFFLUX ANTIPORTER 1); potassium:hydrogen antiporter-1e+0At1g29950transcription factor/ transcription regulatorO.I.H.G.S.X.
0.1414.41608276_atAt5g01050--2e+0At2g03710SEP4 (SEPALLATA 4)O.I.H.G.S.X.
0.1414.41614176_atAt5g01050--2e+0At1g23280MAK16 protein-relatedO.I.H.G.S.X.
0.1212.11617145_atAt5g01050--2e+0At5g52210ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1)O.I.H.G.S.X.
0.1010.31609080_atAt5g01050hypothetical protein LOC100265018-9e-21At5g54440unknown proteinO.I.H.G.S.X.
0.088.51615252_atAt5g01050hypothetical protein LOC100265321-6e-12At4g10030hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.088.51619402_atAt5g01050hypothetical protein LOC100252501-6e-2At3g13710PRA1.F4 (PRENYLATED RAB ACCEPTOR 1.F4)O.I.H.G.S.X.
0.088.51618194_atAt5g01050hypothetical protein LOC100249674-4e-13At3g52170DNA bindingO.I.H.G.S.X.
0.077.81615443_atAt5g01050hypothetical protein LOC100266172-6e-2At5g14250COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13)O.I.H.G.S.X.
0.045.21611311_atAt5g01050hypothetical protein LOC100241992-3e-24At3g12300unknown proteinO.I.H.G.S.X.
0.045.21614958_atAt5g01050hypothetical protein LOC100241674-2e-6At5g130505-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE)O.I.H.G.S.X.
0.034.21608114_atAt5g01050hypothetical protein LOC100256710-1e-44At1g15690AVP1O.I.H.G.S.X.
0.034.21617592_atAt5g01050hypothetical protein LOC100259923-6e-3At1g62990KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7)O.I.H.G.S.X.
0.034.21611286_s_atAt5g01050--3e-1At1g53265unknown proteinO.I.H.G.S.X.
0.034.21621134_atAt5g01050--6e-1At5g03230unknown proteinO.I.H.G.S.X.
0.034.21606866_atAt5g01050hypothetical protein LOC100243155-9e-36At2g02910-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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