Co-expression analysis

Gene ID PtpAffx.225610.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g01050: laccase family protein / diphenol oxidase family protein (HF=9e-4)
Module size 7 genes
NF 0.49
%ile 80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8096.00.94PtpAffx.225610.1.S1_atpmrna45070hypothetical protein-9e-4At5g01050laccase family protein / diphenol oxidase family proteinO.I.H.G.S.X.
0.6086.00.93PtpAffx.211797.1.S1_s_atpmrna23135hypothetical protein-1e-23At3g21530endonuclease/exonuclease/phosphatase family proteinO.I.H.G.S.X.
0.5078.60.95PtpAffx.795.1.A1_atCV273354hypothetical protein-5e+0At5g59480haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.4471.90.96PtpAffx.204632.1.S1_atpmrna9105hypothetical protein-1e-1At5g50200WR3 (WOUND-RESPONSIVE 3)O.I.H.G.S.X.
0.4471.90.97Ptp.7695.1.S1_s_atBU862504hypothetical protein-2e-2At5g02020unknown proteinO.I.H.G.S.X.
0.3661.60.96PtpAffx.225008.1.S1_atpmrna43994hypothetical protein-2e+0At5g65580unknown proteinO.I.H.G.S.X.
0.2340.50.95PtpAffx.214531.1.S1_atpmrna28244hypothetical protein-1e-7At5g20550oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.794.7GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.393.7GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os12g0258700, orthologous to the query gene, PtpAffx.225610.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5676.3Os12g0258700At5g01050-Multicopper oxidase, type 1 domain containingprotein1e-3At5g05390LAC12 (laccase 12)O.I.H.G.S.X.
0.8496.0Os10g0527400At5g01050-Glutathione S-transferase TSI-1 (EC 2.5.1.18)(Glutathione S- transferase 1)5e-1At2g29450ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5)O.I.H.G.S.X.
0.7893.4Os04g0339400At5g01050-Aldo/keto reductase family protein1e-5At1g60690aldo/keto reductase family proteinO.I.H.G.S.X.
0.7591.9Os03g0283200At5g01050-IN2-1 protein2e+0At5g02780In2-1 protein, putativeO.I.H.G.S.X.
0.7289.8Os01g0638000At5g01050-UDP-glucuronosyl/UDP-glucosyltransferase familyprotein1e-2At1g22380AtUGT85A3 (UDP-glucosyl transferase 85A3)O.I.H.G.S.X.
0.6787.2Os02g0755900At5g01050-UDP-glucuronosyl/UDP-glucosyltransferase familyprotein8e-1At1g22340AtUGT85A7 (UDP-glucosyl transferase 85A7)O.I.H.G.S.X.
0.6483.4Os01g0934800At5g01050-Alpha/beta hydrolase fold domain containingprotein1e-1At2g23580MES4 (METHYL ESTERASE 4)O.I.H.G.S.X.
0.6483.4Os01g0627600At5g01050-Cytochrome P450 monooxygenase CYP72A5 (Fragment)1e-2At3g14630CYP72A9O.I.H.G.S.X.
0.6079.7Os10g0528300At5g01050-Tau class GST protein 42e-4At3g43800ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)O.I.H.G.S.X.
0.6079.7Os10g0530900At5g01050-Glutathione S-transferase GST 30 (EC 2.5.1.18)2e+0At1g18680HNH endonuclease domain-containing proteinO.I.H.G.S.X.
0.5877.0Os08g0156100At5g01050-Conserved hypothetical protein1e+0At3g23170unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays



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