Co-expression analysis

Gene ID	PtpAffx.225506.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g03620: subtilase family protein (HF=1e-6)
Module size	6 genes
NF	0.60
%ile	90.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.98	PtpAffx.225506.1.S1_at	pmrna44897	hypothetical protein	-	1e-6	At5g03620	subtilase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.98	PtpAffx.207395.1.S1_at	pmrna14671	hypothetical protein	-	3e-63	At3g51070	dehydration-responsive protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.98	PtpAffx.205555.1.S1_s_at	pmrna10986	MIKC mads-box transcription factor /// hypothetical protein	-	2e-11	At5g20240	PI (PISTILLATA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.98	PtpAffx.217355.1.S1_at	pmrna32577	hypothetical protein	-	9e-1	At3g25573	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.99	PtpAffx.50213.1.S1_at	AY235222.1	hypothetical protein	-	2e-75	At1g24260	SEP3 (SEPALLATA3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.99	PtpAffx.213564.1.S1_at	pmrna26499	aldose reductase with ABC domain	-	5e-1	At2g37760	aldo/keto reductase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.0	99.2	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
11.0	99.1	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.7	98.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.7	97.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage