Co-expression analysis

Gene ID	PtpAffx.225435.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g12330: LRP1 (LATERAL ROOT PRIMORDIUM 1) (HF=4e+0)
Module size	6 genes
NF	0.09
%ile	18.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.33	57.5	0.74	PtpAffx.225435.1.S1_x_at	pmrna44784	hypothetical protein	-	4e+0	At5g12330	LRP1 (LATERAL ROOT PRIMORDIUM 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.81	PtpAffx.225313.1.S1_x_at	pmrna44573	hypothetical protein	-	3e+0	At3g56891	metal ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.79	PtpAffx.225313.1.S1_s_at	pmrna44573	hypothetical protein	-	3e+0	At3g56891	metal ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.80	PtpAffx.222122.1.S1_at	pmrna39349	hypothetical protein	-	1e+0	At3g05741	enzyme inhibitor/ pectinesterase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.80	PtpAffx.33507.1.S1_at	CV256875	-	-	8e-1	At2g14846	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.76	PtpAffx.218774.1.S1_at	pmrna34502	hypothetical protein	-	9e-2	At1g26799	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.6	98.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.2	96.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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