Co-expression analysis

Gene ID PtpAffx.225397.1.S1_x_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g61550: S-locus protein kinase, putative (HF=1e-7)
Module size 32 genes
NF 0.21
%ile 38.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9799.90.88PtpAffx.225397.1.S1_x_atpmrna44718hypothetical protein-1e-7At1g61550S-locus protein kinase, putativeO.I.H.G.S.X.
0.4471.90.96Ptp.2868.1.S1_atBU834773hypothetical protein-2e-5At1g36050unknown proteinO.I.H.G.S.X.
0.3863.70.96PtpAffx.54382.1.A1_atCV242304--3e-9At5g45420myb family transcription factorO.I.H.G.S.X.
0.3661.60.94PtpAffx.53642.1.S1_atCV242715hypothetical protein-1e+0At5g28630glycine-rich proteinO.I.H.G.S.X.
0.3559.70.94PtpAffx.13863.1.A1_atCK087652--1e+0At3g24280SMAP2 (small acidic protein 2)O.I.H.G.S.X.
0.3357.50.97Ptp.5452.1.S1_a_atCV268062hypothetical protein-8e-12At5g49540unknown proteinO.I.H.G.S.X.
0.3255.20.94PtpAffx.143791.2.S1_s_atCK109476hypothetical protein-1e+0At3g16880F-box protein-relatedO.I.H.G.S.X.
0.3255.20.91PtpAffx.215497.1.S1_s_atpmrna29725hypothetical protein-8e-1At5g18690AGP25 (ARABINOGALACTAN PROTEINS 25)O.I.H.G.S.X.
0.3153.70.94Ptp.7396.1.S1_atCK092348hypothetical protein-6e-13At2g30880pleckstrin homology (PH) domain-containing proteinO.I.H.G.S.X.
0.3153.70.96PtpAffx.6033.2.S1_atBU889316histone deacetylase-9e-55At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.H.G.S.X.
0.3052.00.94PtpAffx.215415.1.S1_atpmrna29580hypothetical protein-6e-94At5g15700DNA-directed RNA polymerase (RPOT2)O.I.H.G.S.X.
0.3052.00.92PtpAffx.13703.1.S1_s_atCK095412hypothetical protein-5e+0At1g65650UCH2O.I.H.G.S.X.
0.2950.50.94Ptp.5572.1.S1_s_atCN549739hypothetical protein-8e-24At3g04780-O.I.H.G.S.X.
0.2747.10.94Ptp.3351.1.S1_s_atCK106792hypothetical protein-3e-1At3g58150-O.I.H.G.S.X.
0.2747.10.95PtpAffx.100713.1.S1_a_atAJ774230hypothetical protein-8e-39At3g49100signal recognition particle 9 kDa protein, putative / SRP9, putativeO.I.H.G.S.X.
0.2645.20.95Ptp.2191.1.S1_atCK089935hypothetical protein-8e-6At1g04985unknown proteinO.I.H.G.S.X.
0.2543.60.95Ptp.5318.1.S1_atCX659640hypothetical protein-2e-83At3g11830chaperonin, putativeO.I.H.G.S.X.
0.2441.80.94Ptp.4685.1.S1_atCF233139hypothetical protein-7e+0Atmg01230-O.I.H.G.S.X.
0.2340.50.95Ptp.209.1.S1_atCK087469--5e-1At2g23940unknown proteinO.I.H.G.S.X.
0.2340.50.95Ptp.2277.1.S1_atCF231748hypothetical protein-7e-6At5g22000RHF2A (RING-H2 GROUP F2A)O.I.H.G.S.X.
0.2238.30.95PtpAffx.53059.1.S1_atDN496426--1e+0At4g01790ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein / ribonuclease P-relatedO.I.H.G.S.X.
0.2238.30.94PtpAffx.2703.2.A1_atCV245406hypothetical protein-2e+0At5g52552CPuORF14 (Conserved peptide upstream open reading frame 14)O.I.H.G.S.X.
0.2136.50.93Ptp.7221.1.S1_atBU895343hypothetical protein-7e-5At1g08510FATB (fatty acyl-ACP thioesterases B)O.I.H.G.S.X.
0.2136.50.96PtpAffx.48915.1.S1_atCF229062--1e-1At4g19180nucleoside phosphatase family protein / GDA1/CD39 family proteinO.I.H.G.S.X.
0.1830.80.95PtpAffx.16154.1.S1_atDN485818hypothetical protein-5e-39At1g01350nucleic acid binding / protein binding / zinc ion bindingO.I.H.G.S.X.
0.1525.30.92Ptp.238.1.A1_atCK087627hypothetical protein-1e-4At2g17220protein kinase, putativeO.I.H.G.S.X.
0.1525.30.92PtpAffx.71160.1.S1_atCK107602hypothetical protein-1e+0Atcg00330-O.I.H.G.S.X.
0.1219.60.95Ptp.1845.1.A1_s_atCV256202hypothetical protein-4e-47At1g30580GTP bindingO.I.H.G.S.X.
0.1016.30.92PtpAffx.207085.1.S1_atpmrna14048magnesium transporter-1e-14At3g19640magnesium transporter CorA-like family protein (MRS2-3)O.I.H.G.S.X.
0.0914.60.91Ptp.5567.1.S1_atCK098494--1e-44At2g44610RAB6AO.I.H.G.S.X.
0.0914.60.94Ptp.1491.1.S1_s_atCK093025--6e-8At2g35510SRO1 (SIMILAR TO RCD ONE 1)O.I.H.G.S.X.
0.069.80.93PtpAffx.124056.2.S1_atCF235757--1e-1At5g13790AGL15 (AGAMOUS-LIKE 15)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.497.0GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.892.1GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.583.5GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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