Co-expression analysis

Gene ID	PtpAffx.225371.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g65940: CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) (HF=2e-3)
Module size	6 genes
NF	0.66
%ile	94.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.98	PtpAffx.225371.1.S1_at	pmrna44680	hypothetical protein	-	2e-3	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.98	PtpAffx.209713.1.S1_at	pmrna19174	hypothetical protein	-	7e-31	At1g11190	BFN1 (BIFUNCTIONAL NUCLEASE I)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.99	PtpAffx.205555.1.S1_s_at	pmrna10986	MIKC mads-box transcription factor /// hypothetical protein	-	2e-11	At5g20240	PI (PISTILLATA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.97	PtpAffx.200964.1.S1_at	pmrna1885	hypothetical protein	-	2e-39	At5g40350	MYB24 (myb domain protein 24)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.98	PtpAffx.225506.1.S1_at	pmrna44897	hypothetical protein	-	1e-6	At5g03620	subtilase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.98	PtpAffx.207395.1.S1_at	pmrna14671	hypothetical protein	-	3e-63	At3g51070	dehydration-responsive protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.7	97.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.5	97.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.1	97.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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