Co-expression analysis

Gene ID	PtpAffx.225352.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g27300: S-locus protein kinase, putative (HF=1e-9)
Module size	7 genes
NF	0.31
%ile	55.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	75.4	0.81	PtpAffx.225352.1.S1_at	pmrna44645	hypothetical protein	-	1e-9	At4g27300	S-locus protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.84	PtpAffx.220673.1.S1_at	pmrna37083	hypothetical protein	-	4e-1	At1g10745	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.85	PtpAffx.218372.1.S1_at	pmrna33958	hypothetical protein	-	1e-1	At1g70500	polygalacturonase, putative / pectinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.85	PtpAffx.209740.1.S1_at	pmrna19222	hypothetical protein	-	4e+0	At5g43695	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.85	PtpAffx.211888.1.S1_at	pmrna23343	-	-	4e+0	At3g52350	D111/G-patch domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.86	PtpAffx.215966.1.S1_at	pmrna30455	hypothetical protein	-	3e+0	At5g39650	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.84	PtpAffx.213687.1.S1_at	pmrna26721	-	-	3e+0	At5g66070	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.3	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.6	96.2	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.4	95.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.8	94.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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