Co-expression analysis

Gene ID PtpAffx.225352.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g27300: S-locus protein kinase, putative (HF=1e-9)
Module size 7 genes
NF 0.31
%ile 55.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4875.40.81PtpAffx.225352.1.S1_atpmrna44645hypothetical protein-1e-9At4g27300S-locus protein kinase, putativeO.I.H.G.S.X.
0.3153.70.84PtpAffx.220673.1.S1_atpmrna37083hypothetical protein-4e-1At1g10745-O.I.H.G.S.X.
0.2950.50.85PtpAffx.218372.1.S1_atpmrna33958hypothetical protein-1e-1At1g70500polygalacturonase, putative / pectinase, putativeO.I.H.G.S.X.
0.2645.20.85PtpAffx.209740.1.S1_atpmrna19222hypothetical protein-4e+0At5g43695unknown proteinO.I.H.G.S.X.
0.2543.60.85PtpAffx.211888.1.S1_atpmrna23343--4e+0At3g52350D111/G-patch domain-containing proteinO.I.H.G.S.X.
0.2543.60.86PtpAffx.215966.1.S1_atpmrna30455hypothetical protein-3e+0At5g39650unknown proteinO.I.H.G.S.X.
0.2441.80.84PtpAffx.213687.1.S1_atpmrna26721--3e+0At5g66070zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.3GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
4.696.2GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
4.495.9GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.095.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.095.3GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.894.9GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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