Co-expression analysis

Gene ID PtpAffx.225309.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g39580: peroxidase, putative (HF=2e-1)
Module size 13 genes
NF 0.11
%ile 21.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9299.30.89PtpAffx.225309.1.S1_atpmrna44567hypothetical protein-2e-1At5g39580peroxidase, putativeO.I.H.G.S.X.
0.3052.00.96Ptp.5460.1.S1_atCV248055hypothetical protein-3e-32At4g16450unknown proteinO.I.H.G.S.X.
0.1626.90.96Ptp.4385.1.S1_atCV247957hypothetical protein-5e-34At5g18800NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family proteinO.I.H.G.S.X.
0.1525.30.93PtpAffx.30129.1.S1_atCK090649--7e+0At5g50423-O.I.H.G.S.X.
0.1423.50.94PtpAffx.52705.1.A1_s_atCV256897hypothetical protein-6e-12At4g16450unknown proteinO.I.H.G.S.X.
0.1321.60.95Ptp.3364.1.S1_atBU814868hypothetical protein-2e-17At2g41160ubiquitin-associated (UBA)/TS-N domain-containing proteinO.I.H.G.S.X.
0.1219.60.94PtpAffx.146151.1.S1_s_atCX173632hypothetical protein-5e+0At3g56110PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1)O.I.H.G.S.X.
0.1219.60.95Ptp.3549.1.S1_atDN493225hypothetical protein-2e-3At2g18630unknown proteinO.I.H.G.S.X.
0.0812.90.95PtpAffx.8185.1.S1_atCK087352hypothetical protein-5e-4At4g17010unknown proteinO.I.H.G.S.X.
0.0711.60.94Ptp.158.1.S1_atCK0874045-formyltetrahydrofolate cyclo-ligase-6e+0At5g35300unknown proteinO.I.H.G.S.X.
0.0711.60.94PtpAffx.17919.2.A1_s_atCV275513--4e-26At3g04770RPSAb (40S ribosomal protein SA B)O.I.H.G.S.X.
0.069.80.94PtpAffx.31079.1.A1_atCV248983hypothetical protein-6e-6At5g12390FIS1B (FISSION 1B)O.I.H.G.S.X.
0.069.80.94Ptp.5780.1.S1_a_atCV256087hypothetical protein-2e-50At1g26940peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.397.7GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.289.3GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.684.5GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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