Co-expression analysis

Gene ID	PtpAffx.225305.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g14240: subtilase family protein (HF=2e-8)
Module size	9 genes
NF	0.46
%ile	75.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.90	PtpAffx.225305.1.S1_s_at	pmrna44559	hypothetical protein	-	2e-8	At3g14240	subtilase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.93	PtpAffx.1802.2.S1_at	CV225660	hypothetical protein	-	1e-42	At1g46264	AT-HSFB4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.92	Ptp.7905.1.S1_at	DN501458	-	-	3e+0	At5g03050	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.91	Ptp.1350.1.S1_at	CK093316	hypothetical protein	-	3e-2	At3g59350	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.92	Ptp.1779.1.S1_at	DN484341	hypothetical protein	-	4e-12	At5g55180	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.92	Ptp.722.1.S1_at	CK088161	hypothetical protein	-	2e+0	At5g20820	auxin-responsive protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.94	Ptp.2707.1.S1_at	BU826219	hypothetical protein	-	1e-1	At1g78520	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.94	PtpAffx.39559.1.S1_at	CF237196	hypothetical protein	-	3e+0	At3g45460	zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.92	PtpAffx.211963.1.S1_x_at	pmrna23486	hypothetical protein	-	2e-61	At3g25500	AFH1 (FORMIN HOMOLOGY 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	98.7	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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