Co-expression analysis

Gene ID PtpAffx.225260.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g54420: ATEP3 (HF=4e-13)
Module size 10 genes
NF 0.19
%ile 35.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.70.85PtpAffx.225260.1.S1_atpmrna44483hypothetical protein-4e-13At3g54420ATEP3O.I.H.G.S.X.
0.3357.50.85PtpAffx.41659.1.A1_atDN493100--4e+0At3g56610unknown proteinO.I.H.G.S.X.
0.2850.50.94PtpAffx.161131.1.S1_atCK098913hypothetical protein-2e-33At4g12250GAE5 (UDP-D-GLUCURONATE 4-EPIMERASE 5)O.I.H.G.S.X.
0.2441.80.93Ptp.540.1.S1_s_atCK088437--3e-9At3g25290auxin-responsive family proteinO.I.H.G.S.X.
0.2136.50.92PtpAffx.154543.1.A1_a_atCV268890--5e-24At4g34490ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)O.I.H.G.S.X.
0.1932.70.92PtpAffx.131475.1.S1_atCA934353hypothetical protein-1e+0At3g50750brassinosteroid signalling positive regulator-relatedO.I.H.G.S.X.
0.1729.10.95Ptp.266.1.S1_atDN494955hypothetical protein-5e-12At4g09720Ras-related GTP-binding protein, putativeO.I.H.G.S.X.
0.1321.60.93PtpAffx.222087.1.S1_atpmrna39298hypothetical protein-2e-44At3g20290ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)O.I.H.G.S.X.
0.0914.60.93Ptp.5146.1.S1_atCF232676porin/voltage-dependent anion-selective channel protein-4e-20At5g67500VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2)O.I.H.G.S.X.
0.0914.60.94Ptp.7571.1.S1_s_atCK092545hypothetical protein-4e+0At5g55131-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.1GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.794.7GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.791.8GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage