Co-expression analysis

Gene ID PtpAffx.225233.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g21366: ATP binding / protein tyrosine kinase (HF=2e-11)
Module size 26 genes
NF 0.26
%ile 46.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7594.10.86PtpAffx.225233.1.S1_atpmrna44425hypothetical protein-2e-11At4g21366ATP binding / protein tyrosine kinaseO.I.H.G.S.X.
0.4167.70.90Ptp.4050.17.A1_atCV280539hypothetical protein-4e-11At3g15353MT3 (METALLOTHIONEIN 3)O.I.H.G.S.X.
0.3762.30.89Ptp.7921.1.S1_a_atCV281366hypothetical protein-2e-37At4g37550formamidase, putative / formamide amidohydrolase, putativeO.I.H.G.S.X.
0.3357.50.89PtpAffx.208706.1.S1_s_atpmrna17268--3e-1At1g59840CCB4 (COFACTOR ASSEMBLY OF COMPLEX C)O.I.H.G.S.X.
0.3255.20.92Ptp.2213.1.S1_atCV262432hypothetical protein-5e-45At5g60600HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)O.I.H.G.S.X.
0.3255.20.91Ptp.4220.1.S1_atCK094211hypothetical protein-3e-55At1g63970ISPFO.I.H.G.S.X.
0.3153.70.90PtpAffx.11998.1.A1_atCV231934hypothetical protein-1e-7At1g78240TSD2 (TUMOROUS SHOOT DEVELOPMENT 2)O.I.H.G.S.X.
0.3052.00.89Ptp.7921.1.S1_s_atCV281366hypothetical protein-2e-37At4g37550formamidase, putative / formamide amidohydrolase, putativeO.I.H.G.S.X.
0.2850.50.91PtpAffx.152352.1.S1_s_atCN523321hypothetical protein-9e-49At4g37550formamidase, putative / formamide amidohydrolase, putativeO.I.H.G.S.X.
0.2747.10.92PtpAffx.202267.1.S1_atpmrna4539hypothetical protein-1e-6At3g61800-O.I.H.G.S.X.
0.2747.10.93PtpAffx.16052.2.S1_a_atCK095857hypothetical protein-3e-27At4g22260IM (IMMUTANS)O.I.H.G.S.X.
0.2645.20.92Ptp.5632.3.S1_atCA933999--3e-67At5g60360AALP (Arabidopsis aleurain-like protease)O.I.H.G.S.X.
0.2543.60.88PtpAffx.143754.1.S1_atCX179157hypothetical protein-8e-2At2g47890zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.2441.80.93PtpAffx.202181.1.S1_atpmrna4358hypothetical protein-1e-1At2g45630oxidoreductase family proteinO.I.H.G.S.X.
0.2340.50.91PtpAffx.205981.1.S1_s_atpmrna11856hypothetical protein-6e-8At4g16480INT4 (INOSITOL TRANSPORTER 4)O.I.H.G.S.X.
0.2238.30.94Ptp.5008.1.S1_atCK104934--4e-26At5g54290cytochrome c biogenesis protein familyO.I.H.G.S.X.
0.2238.30.92PtpAffx.4711.3.S1_a_atCF232230hypothetical protein-9e-24At5g11060KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4)O.I.H.G.S.X.
0.1932.70.91PtpAffx.3493.1.S1_atBU862526hypothetical protein-8e-13At1g04620coenzyme F420 hydrogenase family / dehydrogenase, beta subunit familyO.I.H.G.S.X.
0.1932.70.91PtpAffx.715.1.A1_s_atCV276827hypothetical protein-9e-5At3g19170ATPREP1 (PRESEQUENCE PROTEASE 1)O.I.H.G.S.X.
0.1932.70.92PtpAffx.1405.1.S1_s_atCF231325hypothetical protein-1e+0At5g06790unknown proteinO.I.H.G.S.X.
0.1729.10.89Ptp.1229.1.S1_atBI122075hypothetical protein-4e-1At1g01380ETC1 (ENHANCER OF TRY AND CPC 1)O.I.H.G.S.X.
0.1729.10.92PtpAffx.130008.2.S1_atCB240267hypothetical protein-2e-33At5g26110ATP binding / catalytic/ protein kinaseO.I.H.G.S.X.
0.1729.10.92Ptp.5632.3.S1_s_atCA933999hypothetical protein-3e-67At5g60360AALP (Arabidopsis aleurain-like protease)O.I.H.G.S.X.
0.1423.50.91PtpAffx.206536.1.S1_s_atpmrna12968hypothetical protein-6e-25At4g30790unknown proteinO.I.H.G.S.X.
0.1423.50.92PtpAffx.102317.1.A1_atCV229701hypothetical protein-1e+0At2g39540gibberellin-regulated family proteinO.I.H.G.S.X.
0.1219.60.93PtpAffx.203711.1.S1_atpmrna7347hypothetical protein-2e-31At4g21210ATRP1 (PPDK REGULATORY PROTEIN)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.295.6GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.590.9GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.785.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.785.5GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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