Co-expression analysis

Gene ID	PtpAffx.225233.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g21366: ATP binding / protein tyrosine kinase (HF=2e-11)
Module size	26 genes
NF	0.26
%ile	46.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	94.1	0.86	PtpAffx.225233.1.S1_at	pmrna44425	hypothetical protein	-	2e-11	At4g21366	ATP binding / protein tyrosine kinase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.90	Ptp.4050.17.A1_at	CV280539	hypothetical protein	-	4e-11	At3g15353	MT3 (METALLOTHIONEIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.89	Ptp.7921.1.S1_a_at	CV281366	hypothetical protein	-	2e-37	At4g37550	formamidase, putative / formamide amidohydrolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.89	PtpAffx.208706.1.S1_s_at	pmrna17268	-	-	3e-1	At1g59840	CCB4 (COFACTOR ASSEMBLY OF COMPLEX C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.92	Ptp.2213.1.S1_at	CV262432	hypothetical protein	-	5e-45	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.91	Ptp.4220.1.S1_at	CK094211	hypothetical protein	-	3e-55	At1g63970	ISPF	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.90	PtpAffx.11998.1.A1_at	CV231934	hypothetical protein	-	1e-7	At1g78240	TSD2 (TUMOROUS SHOOT DEVELOPMENT 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.89	Ptp.7921.1.S1_s_at	CV281366	hypothetical protein	-	2e-37	At4g37550	formamidase, putative / formamide amidohydrolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.91	PtpAffx.152352.1.S1_s_at	CN523321	hypothetical protein	-	9e-49	At4g37550	formamidase, putative / formamide amidohydrolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.92	PtpAffx.202267.1.S1_at	pmrna4539	hypothetical protein	-	1e-6	At3g61800	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.93	PtpAffx.16052.2.S1_a_at	CK095857	hypothetical protein	-	3e-27	At4g22260	IM (IMMUTANS)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.92	Ptp.5632.3.S1_at	CA933999	-	-	3e-67	At5g60360	AALP (Arabidopsis aleurain-like protease)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.88	PtpAffx.143754.1.S1_at	CX179157	hypothetical protein	-	8e-2	At2g47890	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.93	PtpAffx.202181.1.S1_at	pmrna4358	hypothetical protein	-	1e-1	At2g45630	oxidoreductase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.91	PtpAffx.205981.1.S1_s_at	pmrna11856	hypothetical protein	-	6e-8	At4g16480	INT4 (INOSITOL TRANSPORTER 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.94	Ptp.5008.1.S1_at	CK104934	-	-	4e-26	At5g54290	cytochrome c biogenesis protein family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.92	PtpAffx.4711.3.S1_a_at	CF232230	hypothetical protein	-	9e-24	At5g11060	KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.91	PtpAffx.3493.1.S1_at	BU862526	hypothetical protein	-	8e-13	At1g04620	coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.91	PtpAffx.715.1.A1_s_at	CV276827	hypothetical protein	-	9e-5	At3g19170	ATPREP1 (PRESEQUENCE PROTEASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.92	PtpAffx.1405.1.S1_s_at	CF231325	hypothetical protein	-	1e+0	At5g06790	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.89	Ptp.1229.1.S1_at	BI122075	hypothetical protein	-	4e-1	At1g01380	ETC1 (ENHANCER OF TRY AND CPC 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.92	PtpAffx.130008.2.S1_at	CB240267	hypothetical protein	-	2e-33	At5g26110	ATP binding / catalytic/ protein kinase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.92	Ptp.5632.3.S1_s_at	CA933999	hypothetical protein	-	3e-67	At5g60360	AALP (Arabidopsis aleurain-like protease)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.91	PtpAffx.206536.1.S1_s_at	pmrna12968	hypothetical protein	-	6e-25	At4g30790	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.92	PtpAffx.102317.1.A1_at	CV229701	hypothetical protein	-	1e+0	At2g39540	gibberellin-regulated family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.93	PtpAffx.203711.1.S1_at	pmrna7347	hypothetical protein	-	2e-31	At4g21210	ATRP1 (PPDK REGULATORY PROTEIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	95.6	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5	90.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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