Co-expression analysis

Gene ID	PtpAffx.225189.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g48140: polygalacturonase, putative / pectinase, putative (HF=1e-2)
Module size	15 genes
NF	0.72
%ile	96.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	94.1	1.00	PtpAffx.225189.1.S1_s_at	pmrna44343	hypothetical protein	-	1e-2	At5g48140	polygalacturonase, putative / pectinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.90	97.9	1.00	PtpAffx.22437.1.S1_at	DN491796	hypothetical protein	-	6e+0	At5g04238	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.84	97.1	1.00	PtpAffx.203604.1.S1_at	pmrna7147	hypothetical protein	-	4e-24	At3g13400	sks13 (SKU5 Similar 13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.82	96.3	1.00	PtpAffx.213465.1.S1_at	pmrna26327	hypothetical protein	-	8e-1	At4g25780	pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.81	96.1	1.00	PtpAffx.218160.1.S1_at	pmrna33695	hypothetical protein	-	4e-1	At4g39890	AtRABH1c (Arabidopsis Rab GTPase homolog H1c)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.81	96.1	1.00	PtpAffx.208136.1.S1_at	pmrna16167	hypothetical protein	-	7e-7	At4g13710	pectate lyase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	1.00	PtpAffx.216585.1.S1_at	pmrna31460	hypothetical protein	-	4e-1	At4g23890	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	1.00	PtpAffx.204529.1.S1_at	pmrna8888	hypothetical protein	-	1e-25	At2g16730	BGAL13	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	1.00	PtpAffx.200003.1.S1_at	pmrna4	hypothetical protein	-	7e-23	At1g55560	sks14 (SKU5 Similar 14)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.70	91.7	1.00	PtpAffx.216010.1.S1_s_at	pmrna30539	hypothetical protein	-	2e+0	At4g34300	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	1.00	PtpAffx.205256.1.S1_at	pmrna10422	oligopeptide transporter OPT family	-	1e-15	At1g65730	YSL7 (YELLOW STRIPE LIKE 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	1.00	PtpAffx.212768.1.S1_at	pmrna24984	hypothetical protein	-	9e-5	At3g28007	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	1.00	PtpAffx.215585.1.S1_at	pmrna29863	hypothetical protein	-	6e-53	At4g10260	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	1.00	PtpAffx.214352.1.S1_at	pmrna27911	hypothetical protein	-	8e-1	At1g67290	glyoxal oxidase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	1.00	PtpAffx.220129.1.S1_at	pmrna36471	hypothetical protein	-	1e+0	At3g07460	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	97.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.2	97.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.8	97.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5	94.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4	94.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0	88.0	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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