Co-expression analysis

Gene ID PtpAffx.225172.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g47090: leucine-rich repeat transmembrane protein kinase, putative (HF=2e-6)
Module size 6 genes
NF 0.06
%ile 12.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6187.00.83PtpAffx.225172.1.S1_atpmrna44319hypothetical protein-2e-6At3g47090leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.1626.90.91Ptp.2670.1.S1_atCK092079hypothetical protein-7e-12At4g33140unknown proteinO.I.H.G.S.X.
0.0914.60.89PtpAffx.104546.1.S1_atCV250441potassium efflux antiporter-9e-43At5g51710KEA5O.I.H.G.S.X.
0.069.80.85PtpAffx.207685.1.S1_atpmrna15255hypothetical protein-4e-1At5g53580aldo/keto reductase family proteinO.I.H.G.S.X.
0.058.30.89Ptp.488.1.A1_atCK087424hypothetical protein-2e-1At1g28630unknown proteinO.I.H.G.S.X.
0.023.60.83PtpAffx.22618.1.S1_atDN484872--4e+0At3g12260complex 1 family protein / LVR family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5582.20.88Ptp.6521.1.S1_atCV270263hypothetical protein-2e-7At4g35300TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)O.I.H.G.S.X.
0.4673.70.88Ptp.347.1.A1_atCK088494hypothetical protein-2e-5At5g11960unknown proteinO.I.H.G.S.X.
0.2340.50.88PtpAffx.88231.1.A1_atCV275449hypothetical protein-2e+0At3g46130MYB111 (MYB DOMAIN PROTEIN 111)O.I.H.G.S.X.
0.1932.70.88Ptp.787.1.A1_atCK089229--4e+0At5g2806040S ribosomal protein S24 (RPS24B)O.I.H.G.S.X.
0.1830.80.90PtpAffx.138124.1.S1_atBI120454hypothetical protein-3e-54At3g22750protein kinase, putativeO.I.H.G.S.X.
0.1525.30.88PtpAffx.9205.1.S1_atBI122164hypothetical protein-2e+0At5g40855unknown proteinO.I.H.G.S.X.
0.1525.30.87PtpAffx.28711.1.S1_atCV254672hypothetical protein-1e-20At2g42570unknown proteinO.I.H.G.S.X.
0.1321.60.76PtpAffx.212942.1.S1_atpmrna25324hypothetical protein-1e-4At5g19890peroxidase, putativeO.I.H.G.S.X.
0.1321.60.87PtpAffx.73033.1.S1_atCK087880hypothetical protein-3e-5At3g17950unknown proteinO.I.H.G.S.X.
0.1219.60.92PtpAffx.26991.1.S1_atDN487309hypothetical protein-3e-6At4g12000-O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.598.3GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.796.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.495.9GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
4.495.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.395.8GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.092.9GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.992.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.289.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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