Co-expression analysis

Gene ID	PtpAffx.225172.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g47090: leucine-rich repeat transmembrane protein kinase, putative (HF=2e-6)
Module size	6 genes
NF	0.06
%ile	12.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	87.0	0.83	PtpAffx.225172.1.S1_at	pmrna44319	hypothetical protein	-	2e-6	At3g47090	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.91	Ptp.2670.1.S1_at	CK092079	hypothetical protein	-	7e-12	At4g33140	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.89	PtpAffx.104546.1.S1_at	CV250441	potassium efflux antiporter	-	9e-43	At5g51710	KEA5	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.85	PtpAffx.207685.1.S1_at	pmrna15255	hypothetical protein	-	4e-1	At5g53580	aldo/keto reductase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.89	Ptp.488.1.A1_at	CK087424	hypothetical protein	-	2e-1	At1g28630	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.83	PtpAffx.22618.1.S1_at	DN484872	-	-	4e+0	At3g12260	complex 1 family protein / LVR family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	98.3	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.7	96.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.4	95.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0	92.9	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9	92.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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