Co-expression analysis

Gene ID PtpAffx.225165.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g24080: protein kinase family protein (HF=6e-37)
Module size 7 genes
NF 0.49
%ile 79.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6187.00.87PtpAffx.225165.1.S1_atpmrna44309hypothetical protein-6e-37At5g24080protein kinase family proteinO.I.H.G.S.X.
0.6388.10.82PtpAffx.221867.1.S1_s_atpmrna38960hypothetical protein-3e+0At4g30460glycine-rich proteinO.I.H.G.S.X.
0.5078.60.90Ptp.6983.1.S1_s_atCV241570hypothetical protein-1e-1At4g16160mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinO.I.H.G.S.X.
0.4471.90.89PtpAffx.8561.1.S1_a_atBU819526stress-induced hydrophobic peptide-7e-5At3g05880RCI2A (RARE-COLD-INDUCIBLE 2A)O.I.H.G.S.X.
0.4067.00.87PtpAffx.132097.1.A1_atBP932694hypothetical protein-3e-2At1g15040glutamine amidotransferase-relatedO.I.H.G.S.X.
0.4067.00.87Ptp.6096.1.S1_s_atCK113386hypothetical protein-1e+0At5g24155squalene monooxygenase, putative / squalene epoxidase, putativeO.I.H.G.S.X.
0.3255.20.89PtpAffx.202241.1.S1_atpmrna4493hypothetical protein-5e-1At5g19850hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.999.1GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
5.697.2GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.295.6GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.684.5GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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