Co-expression analysis

Gene ID	PtpAffx.225155.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g01175: unknown protein (HF=6e-1)
Module size	18 genes
NF	0.24
%ile	43.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.82	PtpAffx.225155.1.S1_x_at	pmrna44292	hypothetical protein	-	6e-1	At2g01175	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.88	PtpAffx.93051.1.S1_at	DN500871	hypothetical protein	-	2e+0	At4g25210	transcription regulator	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.87	PtpAffx.121936.1.S1_at	AJ779024	-	-	1e-3	At5g64905	PROPEP3 (Elicitor peptide 3 precursor)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.91	PtpAffx.221670.1.S1_at	pmrna38671	hypothetical protein	-	2e+0	At1g70400	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.85	PtpAffx.223499.1.S1_at	pmrna41538	hypothetical protein	-	5e-1	At3g53560	chloroplast lumen common family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.92	Ptp.7780.1.S1_at	DN499145	precursor of transferase serine hydroxymethyltransferase 7	-	7e-11	At4g37930	SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.91	Ptp.3518.1.A1_at	DN492409	-	-	1e+0	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.90	PtpAffx.221677.1.S1_x_at	pmrna38681	hypothetical protein	-	7e-1	At1g51330	serpin-related / serine protease inhibitor-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.89	Ptp.2988.1.A1_at	DN487753	-	-	4e+0	At5g16510	reversibly glycosylated polypeptide, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.89	PtpAffx.8131.6.A1_a_at	DN486718	hypothetical protein	-	1e+0	At3g12130	KH domain-containing protein / zinc finger (CCCH type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.92	Ptp.3661.1.S1_at	BU894497	hypothetical protein	-	3e+0	At4g39290	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.90	Ptp.5183.1.S1_at	BU832279	hypothetical protein	-	1e-79	At4g14210	PDS3 (PHYTOENE DESATURASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.87	PtpAffx.29153.1.S1_at	DN496362	-	-	1e-2	At5g38970	BR6OX1 (BRASSINOSTEROID-6-OXIDASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.93	PtpAffx.54856.1.S1_at	DN485617	tir-nbs-lrr resistance protein /// hypothetical protein /// tir-nbs-lrr resistance protein /// nbs-lrr resistance protein	-	8e+0	At5g10336	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.93	PtpAffx.53874.1.S1_at	BU813935	hypothetical protein	-	2e+0	At5g44110	POP1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.94	Ptp.1053.1.A1_at	CK090255	histone deacetylase	-	3e-3	At4g33470	hda14 (histone deacetylase 14)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.88	Ptp.3833.1.S1_at	DN488214	hypothetical protein	-	4e-1	At1g34770	MAGE-8 antigen-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.87	Ptp.2194.1.S1_at	CK090000	hypothetical protein	-	2e-1	At2g41750	DTW domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	94.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.3	89.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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