Co-expression analysis

Gene ID PtpAffx.225107.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g28170: sulfotransferase family protein (HF=3e-4)
Module size 24 genes
NF 0.40
%ile 68.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7292.70.81PtpAffx.225107.1.S1_atpmrna44210hypothetical protein-3e-4At1g28170sulfotransferase family proteinO.I.H.G.S.X.
0.7192.60.86PtpAffx.217950.1.S1_s_atpmrna33421hypothetical protein-2e+0At3g45870integral membrane family protein / nodulin MtN21-relatedO.I.H.G.S.X.
0.6287.20.88PtpAffx.219306.1.S1_s_atpmrna35187hypothetical protein-2e-1At4g21280oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)O.I.H.G.S.X.
0.6287.20.89PtpAffx.200015.1.S1_atpmrna24cytochrome P450-8e-1At5g36130cytochrome P450 familyO.I.H.G.S.X.
0.6187.00.87PtpAffx.219304.1.S1_s_atpmrna35185hypothetical protein-2e-1At4g21280oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)O.I.H.G.S.X.
0.6086.00.87PtpAffx.249.67.A1_atCV240981--4e-12At1g47710serpin, putative / serine protease inhibitor, putativeO.I.H.G.S.X.
0.5582.20.85PtpAffx.206099.1.S1_atpmrna12085hypothetical protein-8e-3At3g57240BG3 (BETA-1,3-GLUCANASE 3)O.I.H.G.S.X.
0.5582.20.87Ptp.6057.1.S1_s_atCK090638anthocyanidin synthase-5e-2At4g22880LDOX (LEUCOANTHOCYANIDIN DIOXYGENASE)O.I.H.G.S.X.
0.4875.40.90PtpAffx.145936.1.S1_atCX181983--5e+0At5g48190unknown proteinO.I.H.G.S.X.
0.4774.60.89PtpAffx.203765.1.S1_atpmrna7437hypothetical protein-8e-1At4g28680tyrosine decarboxylase, putativeO.I.H.G.S.X.
0.4369.70.88PtpAffx.225604.1.S1_atpmrna45061tir-nbs-lrr resistance protein-7e-9At3g59780-O.I.H.G.S.X.
0.4268.60.89PtpAffx.205154.1.S1_atpmrna10202hypothetical protein-2e-1At2g01870unknown proteinO.I.H.G.S.X.
0.4167.70.88PtpAffx.212986.1.S1_atpmrna25399hypothetical protein-3e-2At5g64240AtMC3 (metacaspase 3)O.I.H.G.S.X.
0.4167.70.91PtpAffx.225099.1.S1_atpmrna44197hypothetical protein-3e-109At4g30020subtilase family proteinO.I.H.G.S.X.
0.3458.30.84Ptp.6057.1.S1_atCK090638anthocyanidin synthase-5e-2At4g22880LDOX (LEUCOANTHOCYANIDIN DIOXYGENASE)O.I.H.G.S.X.
0.3255.20.90PtpAffx.19596.1.S1_atCV248947--5e+0At3g51610unknown proteinO.I.H.G.S.X.
0.3052.00.87PtpAffx.225483.1.S1_atpmrna44860hypothetical protein-1e+0At5g27260unknown proteinO.I.H.G.S.X.
0.2850.50.85PtpAffx.220769.1.S1_atpmrna37194hypothetical protein-1e-1At3g46930protein kinase family proteinO.I.H.G.S.X.
0.2645.20.89PtpAffx.37135.1.A1_atCV264328hypothetical protein-2e+0At5g51410LUC7 N_terminus domain-containing proteinO.I.H.G.S.X.
0.2441.80.91PtpAffx.204886.1.S1_atpmrna9652white-brown-complex ABC transporter family-5e-46At1g51500CER5 (ECERIFERUM 5)O.I.H.G.S.X.
0.2441.80.83Ptp.6711.1.S1_s_atCV236299chalcone synthase-9e-37At5g13930TT4 (TRANSPARENT TESTA 4)O.I.H.G.S.X.
0.2340.50.88PtpAffx.204062.1.S1_atpmrna8011hypothetical protein-1e-1At2g01818zinc ion bindingO.I.H.G.S.X.
0.2136.50.90PtpAffx.64399.1.S1_atCN523899bile acid:Na+ symporter family protein-2e-21At2g26900bile acid:sodium symporter family proteinO.I.H.G.S.X.
0.1932.70.86PtpAffx.217374.1.S1_atpmrna32605hypothetical protein-3e-1At4g36420ribosomal protein L12 family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.694.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.791.8GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.590.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.188.6GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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