CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.225099.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g30020: subtilase family protein (HF=3e-109)

Module size 6 genes

NF 0.66

%ile 93.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 96.0 0.93 PtpAffx.225099.1.S1_at pmrna44197 hypothetical protein - 3e-109 At4g30020 subtilase family protein O.I. H.G. S.X.
0.67 91.1 0.93 PtpAffx.205154.1.S1_at pmrna10202 hypothetical protein - 2e-1 At2g01870 unknown protein O.I. H.G. S.X.
0.60 86.0 0.94 PtpAffx.203765.1.S1_at pmrna7437 hypothetical protein - 8e-1 At4g28680 tyrosine decarboxylase, putative O.I. H.G. S.X.
0.57 84.2 0.93 PtpAffx.204886.1.S1_at pmrna9652 white-brown-complex ABC transporter family - 5e-46 At1g51500 CER5 (ECERIFERUM 5) O.I. H.G. S.X.
0.50 78.6 0.94 PtpAffx.249.169.A1_a_at CV260069 hypothetical protein - 1e+0 At5g42030 ABIL4 (ABL INTERACTOR-LIKE PROTEIN 4) O.I. H.G. S.X.
0.40 67.0 0.93 PtpAffx.134527.1.A1_at CV232655 hypothetical protein - 1e-6 At1g28110 SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.0 95.3 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6 94.5 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4 94.0 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.2 93.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the grape gene, 1608213_at, orthologous to the query gene, PtpAffx.225099.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 93.6 1608213_at At4g30020 hypothetical protein LOC100245233 - 9e-2 At2g26290 ARSK1 (root-specific kinase 1) O.I. H.G. S.X.
0.64 84.7 1617238_at At4g30020 hypothetical protein LOC100258246 - 3e-27 At1g63430 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.55 77.3 1611391_at At4g30020 hypothetical protein LOC100256320 - 1e-15 At1g48410 AGO1 (ARGONAUTE 1) O.I. H.G. S.X.
0.52 73.9 1622512_at At4g30020 hypothetical protein LOC100260682 - 4e-27 At4g38430 ROPGEF1 O.I. H.G. S.X.
0.50 72.7 1615577_at At4g30020 hypothetical protein LOC100256811 - 4e-92 At5g05170 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) O.I. H.G. S.X.
0.47 67.7 1606646_at At4g30020 hypothetical protein LOC100264115 - 2e-23 At5g09870 CESA5 (CELLULOSE SYNTHASE 5) O.I. H.G. S.X.
0.45 64.6 1620765_at At4g30020 hypothetical protein LOC100266143 - 2e-124 At1g20090 ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) O.I. H.G. S.X.
0.44 64.1 1614933_at At4g30020 hypothetical protein LOC100252359 - 1e+0 At2g32450 calcium-binding EF hand family protein O.I. H.G. S.X.
0.43 61.5 1620677_at At4g30020 hypothetical protein LOC100257709 - 1e+0 At4g20440 smB (small nuclear ribonucleoprotein associated protein B) O.I. H.G. S.X.
0.42 60.1 1621139_at At4g30020 hypothetical protein LOC100262947 - 3e-9 At5g08390 - O.I. H.G. S.X.
0.37 51.7 1615788_at At4g30020 hypothetical protein LOC100250348 - 2e+0 At5g47170 unknown protein O.I. H.G. S.X.
0.36 50.7 1621245_at At4g30020 hypothetical protein LOC100245681 - 1e+0 At4g10630 glutaredoxin family protein O.I. H.G. S.X.
0.34 46.8 1612757_at At4g30020 hypothetical protein LOC100241266 - 1e+0 At2g32560 F-box family protein O.I. H.G. S.X.
0.30 39.4 1612154_at At4g30020 hypothetical protein LOC100255394 - 1e-74 At1g79500 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) O.I. H.G. S.X.
0.29 37.7 1611331_at At4g30020 hypothetical protein LOC100243930 - 7e-18 At5g19980 integral membrane family protein O.I. H.G. S.X.
0.24 28.7 1611111_at At4g30020 hypothetical protein LOC100256502 - 3e-33 At1g63500 ATP binding / binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase O.I. H.G. S.X.
0.23 27.5 1615754_at At4g30020 - - 3e-41 At5g65470 unknown protein O.I. H.G. S.X.
0.21 24.0 1618802_s_at At4g30020 hypothetical protein LOC100264326 - 9e-4 At1g34780 ATAPRL4 (APR-like 4) O.I. H.G. S.X.
0.20 22.4 1621252_at At4g30020 hypothetical protein LOC100263936 - 2e-8 At3g08620 KH domain-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays

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