Co-expression analysis

Gene ID	PtpAffx.225099.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g30020: subtilase family protein (HF=3e-109)
Module size	6 genes
NF	0.66
%ile	93.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.93	PtpAffx.225099.1.S1_at	pmrna44197	hypothetical protein	-	3e-109	At4g30020	subtilase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.93	PtpAffx.205154.1.S1_at	pmrna10202	hypothetical protein	-	2e-1	At2g01870	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.94	PtpAffx.203765.1.S1_at	pmrna7437	hypothetical protein	-	8e-1	At4g28680	tyrosine decarboxylase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.93	PtpAffx.204886.1.S1_at	pmrna9652	white-brown-complex ABC transporter family	-	5e-46	At1g51500	CER5 (ECERIFERUM 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.94	PtpAffx.249.169.A1_a_at	CV260069	hypothetical protein	-	1e+0	At5g42030	ABIL4 (ABL INTERACTOR-LIKE PROTEIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.93	PtpAffx.134527.1.A1_at	CV232655	hypothetical protein	-	1e-6	At1g28110	SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	95.3	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6	94.5	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4	94.0	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.2	93.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the barley gene, Contig12129_at, orthologous to the query gene, PtpAffx.225099.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	Contig12129_at	At4g30020	-	-	2e-14	At4g30020	subtilase family protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	Contig8892_at	At4g30020	flowering time control protein	-	4e-13	At4g16280	FCA	O.I.	H.G.	S.X.	Please select
0.71	87.1	Contig18436_s_at	At4g30020	-	-	1e+0	At2g18000	TAF14 (TBP-associated factor 14)	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig19791_at	At4g30020	-	-	3e-1	At4g06534	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig18856_at	At4g30020	-	-	2e-6	At5g04940	SUVH1 (SU(VAR)3-9 HOMOLOG 1)	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig15181_at	At4g30020	-	-	5e+0	At5g57170	macrophage migration inhibitory factor family protein / MIF family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage