Co-expression analysis

Gene ID PtpAffx.225099.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g30020: subtilase family protein (HF=3e-109)
Module size 6 genes
NF 0.66
%ile 93.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8096.00.93PtpAffx.225099.1.S1_atpmrna44197hypothetical protein-3e-109At4g30020subtilase family proteinO.I.H.G.S.X.
0.6791.10.93PtpAffx.205154.1.S1_atpmrna10202hypothetical protein-2e-1At2g01870unknown proteinO.I.H.G.S.X.
0.6086.00.94PtpAffx.203765.1.S1_atpmrna7437hypothetical protein-8e-1At4g28680tyrosine decarboxylase, putativeO.I.H.G.S.X.
0.5784.20.93PtpAffx.204886.1.S1_atpmrna9652white-brown-complex ABC transporter family-5e-46At1g51500CER5 (ECERIFERUM 5)O.I.H.G.S.X.
0.5078.60.94PtpAffx.249.169.A1_a_atCV260069hypothetical protein-1e+0At5g42030ABIL4 (ABL INTERACTOR-LIKE PROTEIN 4)O.I.H.G.S.X.
0.4067.00.93PtpAffx.134527.1.A1_atCV232655hypothetical protein-1e-6At1g28110SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.095.3GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.694.5GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.494.0GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.293.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g30020, orthologous to the query gene, PtpAffx.225099.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At4g30020829125subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system, cell wall, membrane;BPOFAMO.I.H.G.S.X.
0.4050.8At5g55230835616ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1)Binds and bundles microtubules. Plays a role in stabilizing anti-parallel microtubules in the central spindle at anaphase to early cytokinesis but is not essential at the midline of the phragmoplast at later stages. The timing with which the MAP65-1 was targeted to the spindle appears to be regulated by a phosphorylation sensitive switch. Enhances microtubule polymerization, promotes nucleation and stabilizes microtubules against cold treatment and dilution.O.I.H.G.S.X.
0.3338.1At5g40150834012peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.H.G.S.X.
0.3133.8At1g795008442882-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA)Encodes a protein with 3-deoxy-8-phosphooctulonate synthase (KDOP synthase) activity which is involved in the biosynthesis of KDO, a component of cell wall rhamnogalacturonan II.O.I.H.G.S.X.
0.2930.3At1g24120839024ARL1 (ARG1-LIKE 1)encodes a DnaJ-like protein similar to ARG1 and ARL2 that are both involved in root and hypocotyl gravitropism response. However, null mutation in this gene does not result in defects in gravitropism. Gene is expressed in all tissues examined.O.I.H.G.S.X.
0.2930.3At3g60380825209-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.2830.3At4g32330829367-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.2830.3At5g60940836215transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPAO.I.H.G.S.X.
0.2726.2At3g25500822136AFH1 (FORMIN HOMOLOGY 1)Poly-L-proline-containing (PLP) protein that form part of the signal-transduction cascade that leads to rearrangement of the actin cytoskeleton. AFH1 is a nonprocessive formin that moves from the barbered end to the side of an actin filament after the nucleation event.O.I.H.G.S.X.
0.2624.4At5g62890836409permease, putativeF:transmembrane transporter activity;P:transport;C:cell wall, vacuole, membrane;BOMPFAVO.I.H.G.S.X.
0.2624.4At5g41760834180nucleotide-sugar transporter family proteinF:nucleotide-sugar transmembrane transporter activity, CMP-sialic acid transmembrane transporter activity;P:carbohydrate transport, nucleotide-sugar transport;C:endomembrane system, integral to membrane, Golgi membrane;MOPFO.I.H.G.S.X.
0.2624.4At3g43610823458tubulin bindingF:tubulin binding;P:microtubule cytoskeleton organization;C:chloroplast, spindle pole, microtubule organizing center;MFPOO.I.H.G.S.X.
0.2624.4At3g57030824870strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum, plasma membrane, plant-type cell wall;PBMOFAO.I.H.G.S.X.
0.2420.7At2g27810817328xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAVO.I.H.G.S.X.
0.2420.7At1g67950843123RNA recognition motif (RRM)-containing proteinF:oxidoreductase activity, nucleotide binding, nucleic acid binding;P:oxidation reduction;C:unknown;PFMOO.I.H.G.S.X.
0.2420.7At3g45850823728kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane;MOBFPAVO.I.H.G.S.X.
0.2319.3At1g51570841582C2 domain-containing proteinF:unknown;P:tryptophan biosynthetic process;C:endoplasmic reticulum, cell wall;MPOFO.I.H.G.S.X.
0.2319.3At2g32810817842BGAL9 (Beta galactosidase 9)putative beta-galactosidaseO.I.H.G.S.X.
0.2217.5At4g18030827528dehydration-responsive family proteinF:unknown;P:biological_process unknown;C:Golgi apparatus, plasma membrane, plant-type cell wall;PBOO.I.H.G.S.X.
0.2217.5At2g22670816798IAA8IAA8 (IAA8) gene is auxin inducible.O.I.H.G.S.X.
0.2217.5At1g06960837206small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFOPBVO.I.H.G.S.X.
0.2217.5At2g39290818514PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1)Encodes a phosphatidylglycerolphosphate synthase 2C which is dual-targeted into chloroplasts and mitochondria. Mutant plants have mutant chloroplasts but normal mitochondria.O.I.H.G.S.X.
0.2115.8At1g50575841479lysine decarboxylase family proteinF:carboxy-lyase activity;P:metabolic process;C:chloroplast;BOPFMAO.I.H.G.S.X.
0.2014.4At3g61820825355aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOO.I.H.G.S.X.
0.2014.4At2g37860818362LCD1 (LOWER CELL DENSITY 1)Encodes a protein of unknown function. Mutants have pale leaves, lower cell density in the palisade parenchyma and increased sensitivity to ozone and virulent Pseudomonas syringaeO.I.H.G.S.X.
0.2014.4At2g386808184505'-nucleotidase/ magnesium ion bindingF:magnesium ion binding, 5'-nucleotidase activity;P:biological_process unknown;C:cytoplasm;MOPO.I.H.G.S.X.
0.1912.7At1g72480843580-F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;MFPOO.I.H.G.S.X.
0.1912.7At1g55130841956endomembrane protein 70, putativeF:unknown;P:unknown;C:integral to membrane, Golgi apparatus;MPOFBO.I.H.G.S.X.
0.1912.7At1g19920838580APS2encodes a chloroplast form of ATP sulfurylaseO.I.H.G.S.X.
0.1811.4At4g39120830067IMPL2 (MYO-INOSITOL MONOPHOSPHATASE LIKE 2)Encodes a myo-inositol monophosphatase IMPL2 (myo-Inositol monophosphatase like 2).O.I.H.G.S.X.
0.1710.2At2g37500818326arginine biosynthesis protein ArgJ familyF:glutamate N-acetyltransferase activity;P:arginine biosynthetic process;C:chloroplast;OBFAPO.I.H.G.S.X.
0.1710.2At4g10180826609DET1 (DE-ETIOLATED 1)Encodes a nuclear-localized protein that acts as a repressor of photomorphogenesis and may be involved in chromatin remodeling.O.I.H.G.S.X.
0.168.8At3g16060820851kinesin motor family proteinF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:nucleus, plasma membrane;MOPFBO.I.H.G.S.X.
0.168.8At4g39170830072SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putativeF:phosphatidylinositol transporter activity, transporter activity;P:transport;C:plasma membrane;MPFOO.I.H.G.S.X.
0.157.8At5g12150831088pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing proteinEncodes a protein with similarity to REN1, a Rho GTPase activating protein.O.I.H.G.S.X.
0.157.8At5g09860830846nuclear matrix protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPAO.I.H.G.S.X.
0.157.8At3g61130825285GAUT1 (GALACTURONOSYLTRANSFERASE 1)Encodes a protein with putative galacturonosyltransferase activity.O.I.H.G.S.X.
0.157.8At1g08750837397GPI-anchor transamidase, putativeF:GPI-anchor transamidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MPOFABO.I.H.G.S.X.
0.157.8At1g05430837044unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.157.8At5g44785834508OSB3 (ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 3)F:single-stranded DNA binding;P:biological_process unknown;C:mitochondrion, chloroplast;PBOMO.I.H.G.S.X.
0.146.8At1g64650842773-F:unknown;P:unknown;C:plasma membrane;BPMOFAO.I.H.G.S.X.
0.146.8At5g53620835444unknown proteinF:unknown;P:biological_process unknown;C:unknown;MOBFPAVO.I.H.G.S.X.
0.146.8At3g12010820375-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPO.I.H.G.S.X.
0.146.8At4g18060827531clathrin bindingF:clathrin binding;P:unknown;C:unknown;MOFPBO.I.H.G.S.X.
0.146.8At1g34470840349permease-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.H.G.S.X.
0.146.8At1g68260843155thioesterase family proteinF:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:unknown;BOPAO.I.H.G.S.X.
0.146.8At4g26640828771WRKY20member of WRKY Transcription Factor; Group IO.I.H.G.S.X.
0.135.8At2g21250816664mannose 6-phosphate reductase (NADPH-dependent), putativeF:oxidoreductase activity;P:response to cadmium ion;C:unknown;BMOFPAO.I.H.G.S.X.
0.135.8At1g67930843121Golgi transport complex protein-relatedF:unknown;P:unknown;C:chloroplast;OMFBPVO.I.H.G.S.X.
0.135.8At5g130508311445-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE)5-Formyltetrahydrofolate cycloligase (5-CHO-THF cycloligase - AT5G13050.1) regulates/influences under photorespiratory conditions the activity of another gene product, i.e. serine hydroxymethyltransferase (SHMT) due to accumulating amounts of 5-FormyltetrahydrofolateO.I.H.G.S.X.
0.135.8At1g08660837388glycosyl transferase family 29 protein / sialyltransferase family proteinF:transferase activity, transferring glycosyl groups, sialyltransferase activity;P:protein amino acid glycosylation;C:Golgi apparatus, membrane;MPOVO.I.H.G.S.X.
0.135.8At2g47850819397zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;PMFOBO.I.H.G.S.X.
0.124.9At3g58560825025endonuclease/exonuclease/phosphatase family proteinF:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.H.G.S.X.
0.124.9At3g15380820777choline transporter-relatedF:unknown;P:biological_process unknown;C:plasma membrane;MOFPO.I.H.G.S.X.
0.124.9At1g61010842393CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I)F:protein binding;P:mRNA polyadenylation;C:mRNA cleavage and polyadenylation specificity factor complex, nucleus;BOMAFPVO.I.H.G.S.X.
0.114.1At2g40280818620dehydration-responsive family proteinF:unknown;P:biological_process unknown;C:Golgi apparatus;PBFMOAO.I.H.G.S.X.
0.103.4At3g07140819900GPI transamidase component Gpi16 subunit family proteinF:GPI-anchor transamidase activity;P:biological_process unknown;C:endoplasmic reticulum;MFPOO.I.H.G.S.X.
0.103.4At5g43940834417HOT5 (sensitive to hot temperatures 5)Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. Is required for the acclimation of plants to high temperature and for fertility.O.I.H.G.S.X.
0.103.4At4g39280830084phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putativeF:phenylalanine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:phenylalanyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMAFPO.I.H.G.S.X.
0.092.8At5g58030835915transport protein particle (TRAPP) component Bet3 family proteinF:molecular_function unknown;P:ER to Golgi vesicle-mediated transport;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.092.8At2g01970814728endomembrane protein 70, putativeF:unknown;P:transport;C:integral to membrane, Golgi apparatus, plasma membrane, plant-type cell wall;MPOFO.I.H.G.S.X.
0.082.3At1g48420841263D-CDES (D-CYSTEINE DESULFHYDRASE)Encodes an enzyme that decomposes D-cysteine into pyruvate, H2S, and NH3. Only D-cysteine but not L-cysteine was converted by D-CDes to pyruvate, H2S, and NH3. Unlike homologous bacterial enzymes, it does not have 1-aminocyclopropane-1-carboxylate deaminase activity.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage