Co-expression analysis

Gene ID PtpAffx.225085.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g65274: - (HF=4e+0)
Module size 6 genes
NF 0.44
%ile 73.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5683.90.80PtpAffx.225085.1.S1_s_atpmrna44181hypothetical protein-4e+0At5g65274-O.I.H.G.S.X.
0.4471.90.80PtpAffx.221378.1.S1_atpmrna38249hypothetical protein-9e-1At5g18040unknown proteinO.I.H.G.S.X.
0.4471.90.81PtpAffx.219661.1.S1_atpmrna35628hypothetical protein-1e+1At4g36370unknown proteinO.I.H.G.S.X.
0.4369.70.81PtpAffx.58826.1.A1_atCK089170--5e-1At2g34620mitochondrial transcription termination factor-related / mTERF-relatedO.I.H.G.S.X.
0.2950.50.82PtpAffx.219256.1.S1_atpmrna35121hypothetical protein-3e+0At1g53400unknown proteinO.I.H.G.S.X.
0.2747.10.80PtpAffx.147231.1.A1_atCV244696--1e+0At3g50860clathrin adaptor complex small chain family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.3357.50.78Ptp.5805.2.S1_atAI161701hypothetical protein-3e-78At1g16890ubiquitin-conjugating enzyme, putativeO.I.H.G.S.X.
0.2950.50.78PtpAffx.70210.2.S1_a_atDN494057hypothetical protein-9e-1At3g48720transferase family proteinO.I.H.G.S.X.
0.2747.10.78PtpAffx.217512.1.S1_x_atpmrna32805hypothetical protein-3e-1At5g58590RANBP1 (RAN BINDING PROTEIN 1)O.I.H.G.S.X.
0.2340.50.82PtpAffx.112707.1.A1_atDN486456--1e+1At5g01445unknown proteinO.I.H.G.S.X.
0.1830.80.79PtpAffx.217603.1.S1_atpmrna32937hypothetical protein-8e+0At3g62210EDA32 (embryo sac development arrest 32)O.I.H.G.S.X.
0.1830.80.79PtpAffx.225767.1.S1_atpmrna45350hypothetical protein-2e-1At4g27290ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingO.I.H.G.S.X.
0.1423.50.74PtpAffx.218678.1.S1_atpmrna34385hypothetical protein-3e-1At4g19950unknown proteinO.I.H.G.S.X.
0.1423.50.75PtpAffx.206105.1.S1_atpmrna12099hypothetical protein-5e-3At3g52720ACA1 (ALPHA CARBONIC ANHYDRASE 1)O.I.H.G.S.X.
0.1423.50.75PtpAffx.147196.1.A1_atCV246041--3e+0At5g09920NRPB4O.I.H.G.S.X.
0.1423.50.75PtpAffx.201297.1.S1_atpmrna2576hypothetical protein-4e-1At4g13220unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.897.4GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
4.596.1GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM327358Populus balsamifera_20071015_Seedling_continuous_light_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.791.8GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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