Co-expression analysis

Gene ID	PtpAffx.225085.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g65274: - (HF=4e+0)
Module size	6 genes
NF	0.44
%ile	73.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	0.80	PtpAffx.225085.1.S1_s_at	pmrna44181	hypothetical protein	-	4e+0	At5g65274	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.80	PtpAffx.221378.1.S1_at	pmrna38249	hypothetical protein	-	9e-1	At5g18040	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.81	PtpAffx.219661.1.S1_at	pmrna35628	hypothetical protein	-	1e+1	At4g36370	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.81	PtpAffx.58826.1.A1_at	CK089170	-	-	5e-1	At2g34620	mitochondrial transcription termination factor-related / mTERF-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.82	PtpAffx.219256.1.S1_at	pmrna35121	hypothetical protein	-	3e+0	At1g53400	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.80	PtpAffx.147231.1.A1_at	CV244696	-	-	1e+0	At3g50860	clathrin adaptor complex small chain family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.8	97.4	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.5	96.1	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the barley gene, HC112D12_T3_at, orthologous to the query gene, PtpAffx.225085.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	HC112D12_T3_at	At5g65274	-	-	7e+0	At4g34881	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	HVSMEg0016O05r2_at	At5g65274	-	-	2e+0	At5g40950	RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27)	O.I.	H.G.	S.X.	Please select
0.73	88.7	Contig10927_at	At5g65274	-	-	1e-8	At4g35850	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	HVSMEa0008P17r2_at	At5g65274	-	-	4e+0	At5g66040	STR16 (SULFURTRANSFERASE PROTEIN 16)	O.I.	H.G.	S.X.	Please select
0.53	69.7	Contig23178_at	At5g65274	-	-	1e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig11079_at	At5g65274	-	-	9e-9	At3g26420	ATRZ-1A	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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