Co-expression analysis

Gene ID	PtpAffx.225048.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g48980: oxidoreductase (HF=2e-1)
Module size	6 genes
NF	0.95
%ile	100.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.98	PtpAffx.225048.1.S1_at	pmrna44125	hypothetical protein	-	2e-1	At1g48980	oxidoreductase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.97	PtpAffx.224460.1.S1_x_at	pmrna43015	hypothetical protein	-	6e-1	At2g38780	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.98	PtpAffx.220631.1.S1_at	pmrna37041	hypothetical protein	-	7e-1	At3g46940	deoxyuridine 5'-triphosphate nucleotidohydrolase family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.98	PtpAffx.7770.1.A1_at	CA934754	-	-	4e+0	At1g58460	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.96	PtpAffx.13927.1.S1_at	CX660204	hypothetical protein	-	2e-6	At5g19300	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.96	PtpAffx.140514.1.A1_at	CV255394	-	-	2e-1	At1g13080	CYP71B2 (CYTOCHROME P450 71B2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.2	99.0	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.8	98.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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