Co-expression analysis

Gene ID PtpAffx.224972.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g03230: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding (HF=2e-6)
Module size 6 genes
NF 0.56
%ile 87.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.94PtpAffx.224972.1.S1_atpmrna43930hypothetical protein-2e-6At4g03230ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingO.I.H.G.S.X.
0.7393.60.95PtpAffx.217946.1.S1_x_atpmrna33417hypothetical protein-6e-2At4g18070unknown proteinO.I.H.G.S.X.
0.6791.10.94Ptp.6145.1.S1_atDN500632--1e+0At5g08710regulator of chromosome condensation (RCC1) family protein / UVB-resistance protein-relatedO.I.H.G.S.X.
0.6791.10.95PtpAffx.210610.1.S1_x_atpmrna20813hypothetical protein-5e-21At2g31880leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.3559.70.96PtpAffx.46526.1.S1_atCV243285NAC domain protein, IPR003441-2e-6At2g17040anac036 (Arabidopsis NAC domain containing protein 36)O.I.H.G.S.X.
0.1932.70.96PtpAffx.222596.1.S1_s_atpmrna40127hypothetical protein-1e+0At5g19710-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.698.3GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
5.196.8GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
5.196.8GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
4.395.8GSM244436Mmd infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
3.393.7GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.092.9GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.092.9GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.791.8GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.590.9GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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