Co-expression analysis

Gene ID	PtpAffx.224886.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g26240: proline-rich extensin-like family protein (HF=2e-6)
Module size	8 genes
NF	0.39
%ile	65.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	88.4	0.82	PtpAffx.224886.1.S1_x_at	pmrna43793	hypothetical protein	-	2e-6	At1g26240	proline-rich extensin-like family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.88	PtpAffx.224715.1.S1_s_at	pmrna43527	hypothetical protein	-	4e-25	At1g11300	ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.87	Ptp.3670.2.S1_at	CV229210	hypothetical protein	-	1e-6	At1g21890	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.86	PtpAffx.212465.1.S1_at	pmrna24423	hypothetical protein	-	2e+0	At5g35945	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.86	PtpAffx.63756.2.S1_at	CV274245	-	-	3e-1	At5g09260	VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.86	PtpAffx.214372.1.S1_at	pmrna27964	hypothetical protein	-	2e+0	At3g28140	calmodulin-binding protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.85	PtpAffx.208970.1.S1_at	pmrna17779	hypothetical protein	-	1e-19	At1g25550	myb family transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.86	PtpAffx.115064.1.A1_at	CV233955	l-ascorbate oxidase precursor	-	2e-15	At5g21105	L-ascorbate oxidase/ copper ion binding / oxidoreductase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.1	98.1	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.3	89.8	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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