Co-expression analysis

Gene ID	PtpAffx.224796.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g34790: MEE23 (MATERNAL EFFECT EMBRYO ARREST 23) (HF=5e-5)
Module size	10 genes
NF	0.46
%ile	76.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	91.5	0.89	PtpAffx.224796.1.S1_s_at	pmrna43650	hypothetical protein	-	5e-5	At2g34790	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.91	PtpAffx.205723.1.S1_x_at	pmrna11295	hypothetical protein	-	2e-5	At3g22930	calmodulin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	0.93	PtpAffx.207438.1.S1_at	pmrna14771	hypothetical protein	-	3e-1	At5g42146	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.95	PtpAffx.134772.1.S1_s_at	DN483641	ABC transporter family, retinal flippase subfamily	-	1e-3	At5g61690	ATATH15	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	0.91	PtpAffx.145511.1.S1_at	BP927294	hypothetical protein	-	1e+0	At2g15490	UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.95	PtpAffx.204500.1.S1_s_at	pmrna8828	lysine/histidine transporter /// lysine/histidine transporter	-	2e-7	At1g47670	amino acid transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.93	PtpAffx.32930.1.A1_at	CK095139	hypothetical protein	-	2e-1	At1g14185	glucose-methanol-choline (GMC) oxidoreductase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.92	PtpAffx.202418.1.S1_at	pmrna4854	multidrug/pheromone exporter, MDR family, ABC transporter family	-	3e-24	At3g62150	PGP21 (P-GLYCOPROTEIN 21)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.94	PtpAffx.200436.1.S1_at	pmrna877	hypothetical protein	-	3e-2	At3g51970	AtSAT1 (Arabidopsis thaliana sterol O-acyltransferase 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.93	PtpAffx.130922.1.S1_s_at	AJ773860	-	-	5e-6	At1g66950	PDR11 (PLEIOTROPIC DRUG RESISTANCE 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.3	98.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
8.2	98.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
7.4	98.2	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.1	95.5	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2	93.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage