Co-expression analysis

Gene ID	PtpAffx.224725.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g23150: protein kinase family protein (HF=1e-6)
Module size	12 genes
NF	0.08
%ile	17.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.3	0.80	PtpAffx.224725.1.S1_at	pmrna43538	hypothetical protein	-	1e-6	At4g23150	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.83	PtpAffx.217977.1.S1_at	pmrna33466	hypothetical protein	-	5e+0	At5g25990	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.84	PtpAffx.208190.1.S1_at	pmrna16296	hypothetical protein	-	2e-20	At3g23130	SUP (SUPERMAN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.82	PtpAffx.208224.1.S1_at	pmrna16368	hypothetical protein	-	4e-1	At3g57430	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.85	PtpAffx.18366.1.A1_at	CV250952	-	-	4e+0	At5g53420	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.87	PtpAffx.44134.4.S1_at	CV228495	-	-	6e-1	At5g22180	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.84	PtpAffx.209070.1.S1_at	pmrna17943	hypothetical protein	-	2e-177	At5g49460	ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.80	PtpAffx.101862.1.A1_at	CV248019	hypothetical protein	-	3e+0	At3g27160	GHS1 (GLUCOSE HYPERSENSITIVE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.82	PtpAffx.209900.1.S1_at	pmrna19513	-	-	4e-2	At2g22426	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.82	PtpAffx.217741.1.S1_at	pmrna33126	hypothetical protein	-	3e-1	At5g41270	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.87	PtpAffx.202211.1.S1_at	pmrna4430	hypothetical protein	-	1e-1	At2g34990	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.84	PtpAffx.202840.1.S1_at	pmrna5626	hypothetical protein	-	4e+0	At5g20020	RAN2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	96.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.0	96.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage