Co-expression analysis

Gene ID	PtpAffx.224715.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g11300: ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding (HF=4e-25)
Module size	6 genes
NF	0.53
%ile	83.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.87	PtpAffx.224715.1.S1_s_at	pmrna43527	hypothetical protein	-	4e-25	At1g11300	ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.90	PtpAffx.160277.1.A1_at	CV262870	hypothetical protein	-	3e+0	At4g27930	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.87	Ptp.3670.2.S1_at	CV229210	hypothetical protein	-	1e-6	At1g21890	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.89	PtpAffx.214372.1.S1_at	pmrna27964	hypothetical protein	-	2e+0	At3g28140	calmodulin-binding protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.87	PtpAffx.212465.1.S1_at	pmrna24423	hypothetical protein	-	2e+0	At5g35945	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.89	PtpAffx.95587.1.A1_at	CV240701	hypothetical protein	-	1e+0	At5g53280	PDV1 (PLASTID DIVISION1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.1	99.0	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.0	96.6	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.1	93.2	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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