Co-expression analysis

Gene ID	PtpAffx.224679.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g48810: CB5-D (CYTOCHROME B5 ISOFORM D) (HF=1e-1)
Module size	6 genes
NF	0.01
%ile	1.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.37	62.3	0.72	PtpAffx.224679.1.S1_at	pmrna43461	hypothetical protein	-	1e-1	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.73	PtpAffx.217726.1.S1_at	pmrna33092	hypothetical protein	-	3e+1	At5g55125	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.73	PtpAffx.222838.1.S1_at	pmrna40513	hypothetical protein	-	4e+1	At5g53420	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.72	PtpAffx.98422.1.S1_at	CK113928	-	-	6e+0	At1g49032	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
-	0.4	0.72	PtpAffx.215799.1.S1_at	pmrna30193	-	-	8e-1	At5g27460	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
-	0.4	0.72	PtpAffx.207640.1.S1_at	pmrna15149	hypothetical protein	-	1e+0	At5g64560	magnesium transporter CorA-like family protein (MRS2-2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	97.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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