Co-expression analysis

Gene ID	PtpAffx.224545.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g06080: unknown protein (HF=1e-1)
Module size	15 genes
NF	0.17
%ile	32.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	97.2	0.86	PtpAffx.224545.1.S1_s_at	pmrna43174	hypothetical protein	-	1e-1	At3g06080	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.93	PtpAffx.4303.1.A1_at	BP930597	hypothetical protein	-	1e-17	At1g69310	WRKY57	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.93	PtpAffx.157411.1.S1_s_at	CK101980	hypothetical protein	-	4e-2	At4g36170	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.93	PtpAffx.96295.1.S1_s_at	AJ773566	hypothetical protein	-	9e-11	At2g22660	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.93	Ptp.5101.1.S1_s_at	CV237236	hypothetical protein	-	3e+0	At4g38490	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.93	PtpAffx.12738.1.S1_at	CV266359	-	-	8e-4	At1g33950	avirulence-responsive family protein / avirulence induced gene (AIG1) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.89	Ptp.2274.1.S1_s_at	CK111080	hypothetical protein	-	3e-2	At3g62550	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.95	PtpAffx.116026.1.S1_at	CV253027	ethylene receptor 1	-	3e-36	At2g40940	ERS1 (ETHYLENE RESPONSE SENSOR 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.95	Ptp.3081.1.S1_s_at	CX172877	hypothetical protein	-	2e-65	At5g06580	FAD linked oxidase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.90	PtpAffx.17316.1.S1_at	CK091483	hypothetical protein	-	4e-20	At3g01990	ACR6	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.89	PtpAffx.203048.1.S1_at	pmrna6035	hypothetical protein	-	1e-7	At4g33920	protein phosphatase 2C family protein / PP2C family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.90	PtpAffx.68357.1.S1_s_at	CX185310	hypothetical protein	-	1e+0	At3g29070	protein transmembrane transporter	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.93	PtpAffx.86916.1.A1_at	CV246639	-	-	6e-41	At5g60910	AGL8 (agamous-like 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.89	PtpAffx.139063.1.S1_at	BP926381	hypothetical protein	-	2e+0	At3g28420	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.89	PtpAffx.209622.1.S1_s_at	pmrna19016	hypothetical protein	-	2e-1	At1g16610	SR45	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	91.3	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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