CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.224454.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g08440: - (HF=2e-7)

Module size 21 genes

NF 0.61

%ile 90.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.74 93.8 0.95 PtpAffx.224454.1.S1_at pmrna43008 hypothetical protein - 2e-7 At1g08440 - O.I. H.G. S.X.
0.82 96.3 0.97 PtpAffx.208357.1.S1_at pmrna16615 hypothetical protein - 1e-19 At3g06210 binding O.I. H.G. S.X.
0.80 96.0 0.97 PtpAffx.217356.1.S1_at pmrna32578 hypothetical protein - 8e-1 At3g48330 PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1) O.I. H.G. S.X.
0.71 92.6 0.98 PtpAffx.53295.1.S1_at DN491561 hypothetical protein - 4e-1 At3g26740 CCL (CCR-LIKE) O.I. H.G. S.X.
0.67 91.1 0.98 PtpAffx.215800.1.S1_at pmrna30196 hypothetical protein - 2e-12 At3g19090 RNA-binding protein, putative O.I. H.G. S.X.
0.64 88.4 0.97 PtpAffx.201848.1.S1_at pmrna3676 MIKC mads-box transcription factor - 1e-13 At5g20240 PI (PISTILLATA) O.I. H.G. S.X.
0.63 88.1 0.97 PtpAffx.218401.1.S1_at pmrna34001 hypothetical protein - 8e-105 At1g08730 XIC O.I. H.G. S.X.
0.62 87.2 0.96 PtpAffx.211490.1.S1_at pmrna22518 hypothetical protein - 3e-32 At2g03710 SEP4 (SEPALLATA 4) O.I. H.G. S.X.
0.62 87.2 0.96 PtpAffx.63751.1.A1_at CV256283 hypothetical protein - 4e-8 At1g22760 PAB3 (POLY(A) BINDING PROTEIN 3) O.I. H.G. S.X.
0.62 87.2 0.98 PtpAffx.50213.1.S1_at AY235222.1 hypothetical protein - 2e-75 At1g24260 SEP3 (SEPALLATA3) O.I. H.G. S.X.
0.61 87.0 0.97 PtpAffx.207395.1.S1_at pmrna14671 hypothetical protein - 3e-63 At3g51070 dehydration-responsive protein-related O.I. H.G. S.X.
0.57 84.2 0.97 PtpAffx.218028.1.S1_x_at pmrna33536 hypothetical protein - 4e-5 At5g45960 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.56 83.9 0.97 PtpAffx.56922.1.A1_at CV245718 hypothetical protein - 6e-3 At2g45650 AGL6 (AGAMOUS-LIKE 6) O.I. H.G. S.X.
0.56 83.9 0.98 PtpAffx.203774.1.S1_at pmrna7455 NAC domain protein, IPR003441 - 3e-30 At1g61110 anac025 (Arabidopsis NAC domain containing protein 25) O.I. H.G. S.X.
0.55 82.2 0.98 PtpAffx.225327.1.S1_at pmrna44593 hypothetical protein - 7e-9 At3g59850 polygalacturonase, putative / pectinase, putative O.I. H.G. S.X.
0.54 80.8 0.97 PtpAffx.225506.1.S1_at pmrna44897 hypothetical protein - 1e-6 At5g03620 subtilase family protein O.I. H.G. S.X.
0.53 80.5 0.97 PtpAffx.224567.1.S1_at pmrna43218 hypothetical protein - 5e-42 At1g50310 STP9 (SUGAR TRANSPORTER 9) O.I. H.G. S.X.
0.52 79.4 0.98 PtpAffx.204758.1.S1_s_at pmrna9361 hypothetical protein - 2e-2 At1g23710 unknown protein O.I. H.G. S.X.
0.44 71.9 0.97 PtpAffx.1682.1.S1_at CV271360 hypothetical protein - 3e-5 At1g70670 caleosin-related family protein O.I. H.G. S.X.
0.41 67.7 0.98 PtpAffx.217283.1.S1_s_at pmrna32481 hypothetical protein - 1e-28 At3g42850 galactokinase, putative O.I. H.G. S.X.
0.41 67.7 0.98 PtpAffx.9633.1.S1_at BU867806 hypothetical protein - 3e-2 At1g30800 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.74	93.8	0.95	PtpAffx.224454.1.S1_at	pmrna43008	hypothetical protein	-	2e-7	At1g08440	-	O.I.	H.G.	S.X.
0.82	96.3	0.97	PtpAffx.208357.1.S1_at	pmrna16615	hypothetical protein	-	1e-19	At3g06210	binding	O.I.	H.G.	S.X.
0.80	96.0	0.97	PtpAffx.217356.1.S1_at	pmrna32578	hypothetical protein	-	8e-1	At3g48330	PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.
0.71	92.6	0.98	PtpAffx.53295.1.S1_at	DN491561	hypothetical protein	-	4e-1	At3g26740	CCL (CCR-LIKE)	O.I.	H.G.	S.X.
0.67	91.1	0.98	PtpAffx.215800.1.S1_at	pmrna30196	hypothetical protein	-	2e-12	At3g19090	RNA-binding protein, putative	O.I.	H.G.	S.X.
0.64	88.4	0.97	PtpAffx.201848.1.S1_at	pmrna3676	MIKC mads-box transcription factor	-	1e-13	At5g20240	PI (PISTILLATA)	O.I.	H.G.	S.X.
0.63	88.1	0.97	PtpAffx.218401.1.S1_at	pmrna34001	hypothetical protein	-	8e-105	At1g08730	XIC	O.I.	H.G.	S.X.
0.62	87.2	0.96	PtpAffx.211490.1.S1_at	pmrna22518	hypothetical protein	-	3e-32	At2g03710	SEP4 (SEPALLATA 4)	O.I.	H.G.	S.X.
0.62	87.2	0.96	PtpAffx.63751.1.A1_at	CV256283	hypothetical protein	-	4e-8	At1g22760	PAB3 (POLY(A) BINDING PROTEIN 3)	O.I.	H.G.	S.X.
0.62	87.2	0.98	PtpAffx.50213.1.S1_at	AY235222.1	hypothetical protein	-	2e-75	At1g24260	SEP3 (SEPALLATA3)	O.I.	H.G.	S.X.
0.61	87.0	0.97	PtpAffx.207395.1.S1_at	pmrna14671	hypothetical protein	-	3e-63	At3g51070	dehydration-responsive protein-related	O.I.	H.G.	S.X.
0.57	84.2	0.97	PtpAffx.218028.1.S1_x_at	pmrna33536	hypothetical protein	-	4e-5	At5g45960	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.
0.56	83.9	0.97	PtpAffx.56922.1.A1_at	CV245718	hypothetical protein	-	6e-3	At2g45650	AGL6 (AGAMOUS-LIKE 6)	O.I.	H.G.	S.X.
0.56	83.9	0.98	PtpAffx.203774.1.S1_at	pmrna7455	NAC domain protein, IPR003441	-	3e-30	At1g61110	anac025 (Arabidopsis NAC domain containing protein 25)	O.I.	H.G.	S.X.
0.55	82.2	0.98	PtpAffx.225327.1.S1_at	pmrna44593	hypothetical protein	-	7e-9	At3g59850	polygalacturonase, putative / pectinase, putative	O.I.	H.G.	S.X.
0.54	80.8	0.97	PtpAffx.225506.1.S1_at	pmrna44897	hypothetical protein	-	1e-6	At5g03620	subtilase family protein	O.I.	H.G.	S.X.
0.53	80.5	0.97	PtpAffx.224567.1.S1_at	pmrna43218	hypothetical protein	-	5e-42	At1g50310	STP9 (SUGAR TRANSPORTER 9)	O.I.	H.G.	S.X.
0.52	79.4	0.98	PtpAffx.204758.1.S1_s_at	pmrna9361	hypothetical protein	-	2e-2	At1g23710	unknown protein	O.I.	H.G.	S.X.
0.44	71.9	0.97	PtpAffx.1682.1.S1_at	CV271360	hypothetical protein	-	3e-5	At1g70670	caleosin-related family protein	O.I.	H.G.	S.X.
0.41	67.7	0.98	PtpAffx.217283.1.S1_s_at	pmrna32481	hypothetical protein	-	1e-28	At3g42850	galactokinase, putative	O.I.	H.G.	S.X.
0.41	67.7	0.98	PtpAffx.9633.1.S1_at	BU867806	hypothetical protein	-	3e-2	At1g30800	-	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.9 96.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.4 95.9 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
4.9	96.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	PtpAffx.224454.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g08440: - (HF=2e-7)
Module size	21 genes
NF	0.61
%ile	90.5

Co-expression analysis

Gene ID PtpAffx.224454.1.S1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At1g08440: - (HF=2e-7) Module size 21 genes NF 0.61 %ile 90.5

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.224454.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g08440: - (HF=2e-7)

Module size 21 genes

NF 0.61

%ile 90.5

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays