Co-expression analysis

Gene ID PtpAffx.224430.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g42500: disease resistance-responsive family protein (HF=1e-3)
Module size 40 genes
NF 0.26
%ile 47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9399.50.80PtpAffx.224430.1.S1_atpmrna42952hypothetical protein-1e-3At5g42500disease resistance-responsive family proteinO.I.H.G.S.X.
0.4875.40.95PtpAffx.4085.4.S1_atCV244302hypothetical protein-3e-71At3g59350serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.4673.70.93PtpAffx.202512.1.S1_atpmrna5028hypothetical protein-1e-74At2g43160epsin N-terminal homology (ENTH) domain-containing proteinO.I.H.G.S.X.
0.4471.90.94PtpAffx.210372.1.S1_s_atpmrna20384hypothetical protein-2e-1At3g49590-O.I.H.G.S.X.
0.4167.70.95PtpAffx.31285.1.A1_atCV241181hypothetical protein-1e-3At5g05380PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3)O.I.H.G.S.X.
0.3964.60.93PtpAffx.205612.1.S1_atpmrna11079hypothetical protein-1e-17At1g03970GBF4O.I.H.G.S.X.
0.3964.60.93PtpAffx.216976.1.S1_atpmrna32062hypothetical protein-2e-29At3g24530AAA-type ATPase family protein / ankyrin repeat family proteinO.I.H.G.S.X.
0.3762.30.92PtpAffx.38755.2.S1_s_atCV252052hypothetical protein-2e-56At3g49870ATARLA1C (ADP-ribosylation factor-like A1C)O.I.H.G.S.X.
0.3661.60.94PtpAffx.210302.1.S1_atpmrna20266hypothetical protein-2e+0At3g29750ATP binding / aminoacyl-tRNA ligase/ aspartic-type endopeptidase/ nucleotide bindingO.I.H.G.S.X.
0.3661.60.94PtpAffx.49746.1.A1_atCV226295hypothetical protein-4e-57At1g48790mov34 family proteinO.I.H.G.S.X.
0.3357.50.95PtpAffx.7182.3.A1_atCV253214--6e-3At1g79390unknown proteinO.I.H.G.S.X.
0.3357.50.93PtpAffx.222478.1.S1_atpmrna39929hypothetical protein-1e-48At1g67190F-box family proteinO.I.H.G.S.X.
0.3255.20.94PtpAffx.16311.1.S1_s_atDN491064hypothetical protein-1e+0At4g01110-O.I.H.G.S.X.
0.3255.20.87PtpAffx.144424.1.S1_atCK103024--1e-3At2g15730unknown proteinO.I.H.G.S.X.
0.3255.20.94Ptp.2701.1.S1_atCK092940hypothetical protein-7e-9At5g05760SYP31 (SYNTAXIN OF PLANTS 31)O.I.H.G.S.X.
0.3052.00.94Ptp.1187.1.A1_s_atCK089849hypothetical protein-2e-15At5g43130TAF4 (TBP-ASSOCIATED FACTOR 4)O.I.H.G.S.X.
0.2950.50.96PtpAffx.249.93.S1_x_atBP934988hypothetical protein-0At5g13490AAC2 (ADP/ATP carrier 2)O.I.H.G.S.X.
0.2950.50.95Ptp.5082.1.S1_s_atCX654214hypothetical protein-8e-41At3g52880monodehydroascorbate reductase, putativeO.I.H.G.S.X.
0.2850.50.93Ptp.4510.1.S1_atCV261413hypothetical protein-1e-8At1g14140mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.2850.50.88PtpAffx.214162.1.S1_atpmrna27552hypothetical protein-5e-2At5g25580-O.I.H.G.S.X.
0.2747.10.94Ptp.6193.1.S1_atCV249273hypothetical protein-1e-19At3g03070NADH-ubiquinone oxidoreductase-relatedO.I.H.G.S.X.
0.2747.10.91PtpAffx.11615.1.A1_atCV259125hypothetical protein-3e-11At3g58190LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29)O.I.H.G.S.X.
0.2645.20.94PtpAffx.12640.1.A1_atCV240965hypothetical protein-2e-148At3g20290ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)O.I.H.G.S.X.
0.2645.20.94Ptp.6019.2.S1_atCV233725hypothetical protein-1e-25At1g62040ATG8C (autophagy 8c)O.I.H.G.S.X.
0.2645.20.94Ptp.2415.1.A1_s_atCX175044hypothetical protein-6e-13At3g23300dehydration-responsive protein-relatedO.I.H.G.S.X.
0.2645.20.93PtpAffx.151332.1.S1_atDN500752--4e+0At2g16070PDV2 (PLASTID DIVISION2)O.I.H.G.S.X.
0.2441.80.95Ptp.654.1.S1_s_atCX174493hypothetical protein-5e-7At4g37830cytochrome c oxidase-relatedO.I.H.G.S.X.
0.2340.50.93PtpAffx.51742.1.S1_atCV243886hypothetical protein-7e-45At3g02090mitochondrial processing peptidase beta subunit, putativeO.I.H.G.S.X.
0.2340.50.93Ptp.5517.3.A1_atCV226502hypothetical protein-5e-19At3g23980unknown proteinO.I.H.G.S.X.
0.2238.30.93PtpAffx.2025.2.A1_atCV235188hypothetical protein-2e-27At4g33910oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.2238.30.93Ptp.5570.1.S1_atCV261857hypothetical protein-5e-47At3g62560GTP-binding protein, putativeO.I.H.G.S.X.
0.2034.60.91PtpAffx.211857.1.S1_atpmrna23273hypothetical protein-1e-2At1g05790lipase class 3 family proteinO.I.H.G.S.X.
0.1932.70.94PtpAffx.201782.1.S1_s_atpmrna3552hypothetical protein-2e-74At4g09810transporter-relatedO.I.H.G.S.X.
0.1626.90.88PtpAffx.9728.1.S1_atDN492049hypothetical protein-1e-14At1g35720ANNAT1 (ANNEXIN ARABIDOPSIS 1)O.I.H.G.S.X.
0.1423.50.90PtpAffx.21365.1.S1_atDN491950hypothetical protein-2e+0At3g57062unknown proteinO.I.H.G.S.X.
0.1423.50.91PtpAffx.222087.1.S1_atpmrna39298hypothetical protein-2e-44At3g20290ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)O.I.H.G.S.X.
0.1321.60.91PtpAffx.12458.1.S1_atCV226822--2e-8At5g20650COPT5O.I.H.G.S.X.
0.1321.60.92PtpAffx.141458.1.S1_s_atDN501855hypothetical protein-4e-16At3g10700GHMP kinase family proteinO.I.H.G.S.X.
0.1118.10.94PtpAffx.8063.1.S1_atCK096400hypothetical protein-4e-27At5g53140protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.0812.90.85PtpAffx.210916.1.S1_atpmrna21445hypothetical protein-1e-40At1g54960ANP2O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.389.8GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.987.2GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.684.5GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.583.5GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.583.5GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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