Co-expression analysis

Gene ID PtpAffx.224360.1.S1_x_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g23190: CRK11 (CYSTEINE-RICH RLK11) (HF=2e-42)
Module size 6 genes
NF 0.01
%ile 2.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5984.90.78PtpAffx.224360.1.S1_x_atpmrna42826hypothetical protein-2e-42At4g23190CRK11 (CYSTEINE-RICH RLK11)O.I.H.G.S.X.
0.058.30.80PtpAffx.224198.1.S1_atpmrna42514glutamate-gated kainate-type ion channel receptor subunit GluR5-1e+0At2g19480NAP1O.I.H.G.S.X.
0.058.30.83PtpAffx.224105.1.S1_s_atpmrna42343hypothetical protein-8e-1At1g23750DNA-binding protein-relatedO.I.H.G.S.X.
0.046.90.84PtpAffx.6105.4.S1_atCV266789hypothetical protein-7e-2At3g48890ATMP2O.I.H.G.S.X.
-0.40.78PtpAffx.218440.1.S1_atpmrna34052cytochrome P450-4e-2At5g36110CYP716A1O.I.H.G.S.X.
-0.40.83PtpAffx.224186.1.S1_atpmrna42489tir-nbs-lrr resistance protein-5e-2At2g03030Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.996.5GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
4.095.3GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
4.095.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM372044Clone1979_LPI5_N+_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.894.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.092.9GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.590.9GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g23190, orthologous to the query gene, PtpAffx.224360.1.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.157.8At4g23190828418CRK11 (CYSTEINE-RICH RLK11)Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307)O.I.H.G.S.X.
0.6781.6At1g72520843584lipoxygenase, putativeF:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:growth, jasmonic acid biosynthetic process, response to wounding, defense response;C:chloroplast;PMBFOO.I.H.G.S.X.
0.5773.8At3g01830820033calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.H.G.S.X.
0.4050.8At2g25735817115unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.3133.8At4g14455827091ATBET12Encodes a Bet1/Sft1-like SNARE protein, which can only partially suppresses the temperature-sensitive growth defect in sft1-1 yeast cells; however, it cannot support the deletion of the yeast BET1 gene (bet1Δ). In yeast, Bet1p is the v-SNARE (soluble N-ethylmaleimide-sensitive factor adaptor protein receptor, V-type) involved in trafficking between the ER and Golgi.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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