CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.224333.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g74090: SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18) (HF=1e-1)

Module size 6 genes

NF 0.47

%ile 76.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.95 PtpAffx.224333.1.S1_at pmrna42787 hypothetical protein - 1e-1 At1g74090 SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18) O.I. H.G. S.X.
0.91 99.2 0.95 PtpAffx.224333.1.S1_x_at pmrna42787 hypothetical protein - 1e-1 At1g74090 SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18) O.I. H.G. S.X.
0.50 78.6 0.96 PtpAffx.203780.1.S1_at pmrna7465 hypothetical protein - 1e-4 At3g09020 alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein O.I. H.G. S.X.
0.33 57.5 0.95 Ptp.7764.1.S1_at DN489656 hypothetical protein - 5e+0 At5g49170 unknown protein O.I. H.G. S.X.
0.33 57.5 0.95 Ptp.7632.1.S1_at DN497977 ZIP transporter - 2e-1 At5g59520 ZIP2 O.I. H.G. S.X.
0.19 32.7 0.95 Ptp.7158.1.S1_at CV246958 - - 8e+0 At5g64310 AGP1 (ARABINOGALACTAN PROTEIN 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.97	Ptp.478.1.A1_at	CK087253	hypothetical protein	-	4e-1	At4g25410	DNA binding / transcription factor	O.I.	H.G.	S.X.
0.48	75.4	0.93	PtpAffx.908.1.S1_at	CV263697	hypothetical protein	-	5e+0	At4g33720	pathogenesis-related protein, putative	O.I.	H.G.	S.X.
0.44	71.9	0.93	PtpAffx.200837.1.S1_at	pmrna1629	hypothetical protein	-	6e-4	At3g51970	AtSAT1 (Arabidopsis thaliana sterol O-acyltransferase 1)	O.I.	H.G.	S.X.
0.31	53.7	0.93	Ptp.325.1.A1_s_at	CK088352	cytochrome P450	-	7e-3	At1g01190	CYP78A8	O.I.	H.G.	S.X.
0.30	52.0	0.93	PtpAffx.200207.1.S1_at	pmrna393	hypothetical protein	-	2e-28	At3g24240	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.
0.29	50.5	0.91	Ptp.2993.1.S1_at	CX658401	hypothetical protein	-	7e-12	At3g02885	GASA5 (GAST1 PROTEIN HOMOLOG 5)	O.I.	H.G.	S.X.
0.29	50.5	0.93	PtpAffx.153576.1.A1_at	CV251940	hypothetical protein	-	1e+0	At1g72210	basic helix-loop-helix (bHLH) family protein (bHLH096)	O.I.	H.G.	S.X.
0.29	50.5	0.94	Ptp.6857.1.S1_at	BU833205	hypothetical protein	-	6e-9	At1g20590	cyclin, putative	O.I.	H.G.	S.X.
0.27	47.1	0.93	Ptp.4115.1.S1_at	AJ777870	hypothetical protein	-	1e-1	At1g72150	PATL1 (PATELLIN 1)	O.I.	H.G.	S.X.
0.27	47.1	0.94	Ptp.789.1.S1_at	CK089311	hypothetical protein	-	8e-8	At2g41820	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.
0.25	43.6	0.95	PtpAffx.92940.1.S1_at	CX658017	dehydroquinate dehydratase/ shikimate dehydrogenase	-	2e+0	At2g29180	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.6 98.3 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.7 96.3 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2 89.3 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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