Co-expression analysis

Gene ID	PtpAffx.224333.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g74090: SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18) (HF=1e-1)
Module size	6 genes
NF	0.47
%ile	76.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.95	PtpAffx.224333.1.S1_at	pmrna42787	hypothetical protein	-	1e-1	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.95	PtpAffx.224333.1.S1_x_at	pmrna42787	hypothetical protein	-	1e-1	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.203780.1.S1_at	pmrna7465	hypothetical protein	-	1e-4	At3g09020	alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.95	Ptp.7764.1.S1_at	DN489656	hypothetical protein	-	5e+0	At5g49170	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.95	Ptp.7632.1.S1_at	DN497977	ZIP transporter	-	2e-1	At5g59520	ZIP2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.95	Ptp.7158.1.S1_at	CV246958	-	-	8e+0	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the maize gene, Zm.3916.1.S1_at, orthologous to the query gene, PtpAffx.224333.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	Zm.3916.1.S1_at	At1g74090	hypothetical protein LOC100277396	-	2e+0	At4g04460	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	Zm.3429.1.A1_at	At1g74090	UV-induced protein uvi31	-	6e+0	At5g12980	rcd1-like cell differentiation protein, putative	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.6146.1.A1_at	At1g74090	brassinosteroid biosynthesis-like protein	-	1e-40	At3g19820	DWF1 (DWARF 1)	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.5754.1.A1_at	At1g74090	metallothionein-like protein 1	-	7e-1	At1g07610	MT1C	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.3829.1.S1_at	At1g74090	-	-	1e-15	At1g23310	GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.20	14.2	Zm.263.1.A1_at	At1g74090	G-box binding factor 1	-	5e-3	At2g35530	bZIP transcription factor family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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