Co-expression analysis

Gene ID	PtpAffx.224333.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g74090: SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18) (HF=1e-1)
Module size	6 genes
NF	0.47
%ile	76.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.95	PtpAffx.224333.1.S1_at	pmrna42787	hypothetical protein	-	1e-1	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.95	PtpAffx.224333.1.S1_x_at	pmrna42787	hypothetical protein	-	1e-1	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.203780.1.S1_at	pmrna7465	hypothetical protein	-	1e-4	At3g09020	alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.95	Ptp.7764.1.S1_at	DN489656	hypothetical protein	-	5e+0	At5g49170	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.95	Ptp.7632.1.S1_at	DN497977	ZIP transporter	-	2e-1	At5g59520	ZIP2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.95	Ptp.7158.1.S1_at	CV246958	-	-	8e+0	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, Ta.25959.1.A1_at, orthologous to the query gene, PtpAffx.224333.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	Ta.25959.1.A1_at	At1g74090	-	-	8e-1	At1g25330	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.9461.2.A1_a_at	At1g74090	-	-	1e-6	At5g14420	RGLG2 (RING domain Ligase2)	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.4934.1.S1_at	At1g74090	-	-	8e-2	At2g34750	RNA polymerase I specific transcription initiation factor RRN3 family protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	Ta.6531.1.S1_a_at	At1g74090	-	-	5e-1	At3g17440	NPSN13 (NOVEL PLANT SNARE 13)	O.I.	H.G.	S.X.	Please select
0.07	8.6	Ta.24233.1.A1_at	At1g74090	-	-	2e+0	At3g55600	-	O.I.	H.G.	S.X.	Please select
0.05	6.7	TaAffx.66882.1.A1_at	At1g74090	-	-	1e+0	At3g29030	EXPA5 (EXPANSIN A5)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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