Co-expression analysis

Gene ID PtpAffx.224314.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g13200: GRAM domain-containing protein / ABA-responsive protein-related (HF=4e-4)
Module size 6 genes
NF 0.05
%ile 11.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5582.20.82PtpAffx.224314.1.S1_atpmrna42754hypothetical protein-4e-4At5g13200GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.
0.4673.70.82PtpAffx.45649.1.S1_atCK090925hypothetical protein-3e-1At2g22475GEM (GL2-EXPRESSION MODULATOR)O.I.H.G.S.X.
0.069.80.82PtpAffx.201566.1.S1_s_atpmrna3072hypothetical protein-2e+0At3g14210ESM1 (epithiospecifier modifier 1)O.I.H.G.S.X.
0.058.30.84PtpAffx.80839.1.S1_atCV267772hypothetical protein-7e-60At4g24160hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.035.20.82PtpAffx.201062.1.S1_atpmrna2096hypothetical protein-3e-61At3g26932DRB3 (dsRNA-binding protein 3)O.I.H.G.S.X.
0.023.60.84PtpAffx.3704.1.S1_atCV254514hypothetical protein-4e-64At5g54960PDC2 (pyruvate decarboxylase-2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.597.8GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.897.4GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.896.4GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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