Co-expression analysis

Gene ID	PtpAffx.224314.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g13200: GRAM domain-containing protein / ABA-responsive protein-related (HF=4e-4)
Module size	6 genes
NF	0.05
%ile	11.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.82	PtpAffx.224314.1.S1_at	pmrna42754	hypothetical protein	-	4e-4	At5g13200	GRAM domain-containing protein / ABA-responsive protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.82	PtpAffx.45649.1.S1_at	CK090925	hypothetical protein	-	3e-1	At2g22475	GEM (GL2-EXPRESSION MODULATOR)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.82	PtpAffx.201566.1.S1_s_at	pmrna3072	hypothetical protein	-	2e+0	At3g14210	ESM1 (epithiospecifier modifier 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.84	PtpAffx.80839.1.S1_at	CV267772	hypothetical protein	-	7e-60	At4g24160	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.82	PtpAffx.201062.1.S1_at	pmrna2096	hypothetical protein	-	3e-61	At3g26932	DRB3 (dsRNA-binding protein 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.84	PtpAffx.3704.1.S1_at	CV254514	hypothetical protein	-	4e-64	At5g54960	PDC2 (pyruvate decarboxylase-2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	97.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.8	97.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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